mason/solgs/population/multiple_traits_output.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /solgs/population/multiple_traits_output.mas - displays multiple traits GS analysis output and links to traits' GS detailed output pages
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15 <%args>
  16
  17 $trait_pages
  18 $training_pop_analyzed_traits
  19 $training_pop_analyzed_traits_ids => undef
  20 $training_pop_id
  21 $training_pop_name
  22 $training_pop_desc
  23 $training_pop_url
  24 $training_traits_code => undef
  25
  26 $model_data
  27 $selection_prediction_download => undef
  28 $selection_pop_id => undef
  29 $selection_pop_name => undef
  30 $list_of_prediction_pops => undef
  31 $selection_pop_analyzed_traits => undef
  32 $selection_pop_analyzed_traits_ids => undef
  33 $genotyping_protocol_id
  34
  35 </%args>
  36
  37 <%perl>
  38
  39 my $training_traits_ids = join(',', @$training_pop_analyzed_traits_ids);
  40
  41 my $selection_traits_ids;
  42
  43 if ($selection_pop_analyzed_traits_ids) {
  44 $selection_traits_ids = join(',', @$selection_pop_analyzed_traits_ids);
  45 }
  46
  47 </%perl>
  48
  49 <& /util/import_css.mas, paths => ['/static/css/solgs/solgs.css'] &>
  50
  51 <& /util/import_javascript.mas, classes => ["solGS.listTypeSelectionPopulation"] &>
  52
  53 <& /page/page_title.mas,
  54    title => "Prediction models from $training_pop_name"
  55 &>
  56
  57
  58 <& /solgs/model/model_summary.mas,
  59      model_data => $model_data
  60   &>
  61
  62   <& /solgs/population/hidden_input.mas,
  63     training_pop_id       => $training_pop_id,
  64     training_pop_name      => $training_pop_name,
  65     training_pop_desc      => $training_pop_desc,
  66     genotyping_protocol_id => $genotyping_protocol_id,
  67     training_traits_ids    => $training_traits_ids,
  68     selection_traits_ids   => $selection_traits_ids,
  69     training_traits_code => $training_traits_code
  70    &>
  71
  72 <& selection_populations.mas,
  73    selection_prediction_download  => $selection_prediction_download,
  74    training_pop_analyzed_traits                => $training_pop_analyzed_traits,
  75    training_pop_id               => $training_pop_id,
  76    training_pop_name                   => $training_pop_name,
  77    selection_pop_id              => $selection_pop_id,
  78     selection_pop_name            => $selection_pop_name,
  79    list_of_prediction_pops        => $list_of_prediction_pops,
  80
  81    selection_pop_analyzed_traits => $selection_pop_analyzed_traits,
  82 &>
  83
  84 <& /solgs/tools/correlation/genetic_correlation.mas,
  85      training_pop_analyzed_traits     => $training_pop_analyzed_traits,
  86      training_pop_id                         => $training_pop_id,
  87      training_pop_name                    => $training_pop_name,
  88      selection_pop_id                       => $selection_pop_id,
  89      selection_pop_name                 => $selection_pop_name,
  90      selection_pop_analyzed_traits => $selection_pop_analyzed_traits,
  91 &>
  92
  93
  94 <& /solgs/tools/genetic_gain/genetic_gain.mas,
  95      training_pop_analyzed_traits                => $training_pop_analyzed_traits,
  96      training_pop_analyzed_traits_ids            => $training_pop_analyzed_traits_ids,
  97      training_pop_id                         => $training_pop_id,
  98      project_name                   => $training_pop_name,
  99      selection_pop_id              => $selection_pop_id,
 100      selection_pop_name            => $selection_pop_name,
 101      selection_pop_analyzed_traits => $selection_pop_analyzed_traits,
 102 &>
 103
 104
 105 <& /solgs/tools/selection_index/selection_index.mas,
 106      training_pop_analyzed_traits  => $training_pop_analyzed_traits,
 107      training_pop_id               => $training_pop_id,
 108      training_pop_name             => $training_pop_name,
 109      selection_pop_id              => $selection_pop_id,
 110      selection_pop_name            => $selection_pop_name,
 111      selection_pop_analyzed_traits => $selection_pop_analyzed_traits,
 112   &>
 113
 114
 115 <& /solgs/tools/cluster/analysis.mas &>
 116
 117   <& /solgs/tools/kinship/analysis.mas,
 118      pop_id => $training_pop_id &>
 119
 120 <& /solgs/population/trait_acronyms.mas,
 121 &>