mason/solgs/population/selection_trait.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /solgs/population/selection_trait.mas - displays trait GEBV prediction output for selection population using single trial model.
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15
  16 <%args>
  17
  18
  19 $trait_abbr
  20 $trait_name
  21 $trait_id
  22
  23 $traits_no => ''
  24
  25 $training_pop_id
  26 $training_pop_name
  27 $training_pop_desc => ''
  28 $training_pop_owner => ''
  29 $training_stocks_cnt => ''
  30 $training_markers_cnt => ''
  31 $training_pop_url => ''
  32
  33 $selection_pop_id => ''
  34 $selection_pop_name => ''
  35 $selection_pop_desc => ''
  36 $selection_pop_owner => ''
  37 $selection_stocks_cnt => ''
  38 $selection_markers_cnt => ''
  39
  40 $model_page_url => ''
  41 $owner => ''
  42 $protocol_url => ''
  43 $top_blups
  44 $blups_download_url
  45 $combined_populations => ''
  46 $combo_pops_id => ''
  47 $genotyping_protocol_id
  48 $data_set_type => ''
  49
  50
  51 </%args>
  52
  53 <%perl>
  54 </%perl>
  55
  56   <& /util/import_javascript.mas, classes => ["d3.d3Min", "solGS.solGS",
  57                                               "flot.flot", "flot.categories",
  58                                               "flot.tooltip", "flot.selection", "flot.navigate",
  59                                               "flot.axisLabels",
  60                                              ]
  61   &>
  62
  63 <& /util/import_css.mas, paths => ['/static/css/solgs/solgs.css', '/static/css/d3-tip.css'] &>
  64
  65
  66 <& /page/page_title.mas,
  67    title => "GEBVs for $trait_name ($trait_abbr) in $selection_pop_name"
  68 &>
  69
  70 <&| /page/info_section.mas,
  71   collapsible => 1,
  72   collapsed   => 0,
  73   title       => "Selection population summary",
  74   &>
  75
  76  <& summary.mas,
  77     selection_pop_id   => $selection_pop_id,
  78     selection_pop_name => $selection_pop_name,
  79     selection_pop_desc => $selection_pop_desc,
  80     model_page_url   => $model_page_url,
  81         training_pop_url => $training_pop_url,
  82     stocks_no    => $selection_stocks_cnt,
  83     markers_no   => $selection_markers_cnt,
  84     traits_no    => $traits_no,
  85     trait_name   => $trait_name,
  86     protocol_url => $protocol_url,
  87     owner        => $selection_pop_owner,
  88    combined_populations => $combined_populations,
  89  &>
  90
  91  <& /solgs/population/hidden_input.mas,
  92         training_pop_id  => $training_pop_id,
  93                 training_pop_name => $training_pop_name,
  94                 training_pop_desc => $training_pop_desc,
  95                 selection_pop_id  => $selection_pop_id,
  96                 selection_pop_name => $selection_pop_name,
  97                 selection_pop_desc => $selection_pop_desc,
  98                 genotyping_protocol_id => $genotyping_protocol_id,
  99                 trait_id => $trait_id,
 100         combo_pops_id => $combo_pops_id
 101     &>
 102 </&>
 103
 104 <& /solgs/tools/pca/analysis.mas &>
 105
 106 <& /solgs/model/gebvs.mas,
 107    top_blups         => $top_blups,
 108   blups_download_url => $blups_download_url,
 109
 110 &>
 111
 112
 113 <& /solgs/tools/genetic_gain/genetic_gain.mas,
 114    trait_id         => $trait_id,
 115    training_pop_id  => $training_pop_id,
 116    selection_pop_id => $selection_pop_id,
 117 &>