mason/genefamily/manual/index.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /genefamily/manual/index.mas - a component for displaying manually curated gene families
   6
   7 =head1 DESCRIPTION
   8
   9
  10 Parameters:
  11
  12 =over 2
  13
  14 =item hashref
  15
  16 hashref with all the parameters needed for printing the curated gene family page
  17
  18 =item locus_add_uri
  19  uri for adding a locus to the gene family
  20
  21 =back
  22
  23 =head1 AUTHOR
  24
  25 Naama Menda <nm249@cornell.edu>
  26
  27 =cut
  28
  29
  30 </%doc>
  31
  32 <%args>
  33
  34 $hashref
  35 $locus_add_uri => '/ajax/locus/associate_locus'
  36 $members_div   => 'locusgroup_members'
  37
  38 </%args>
  39
  40 <%perl>
  41
  42 my $genefamily = $hashref->{genefamily};
  43 my $locusgroup_id = $genefamily->get_locusgroup_id;
  44 my $this_page = "/genefamily/manual/$locusgroup_id/view/";
  45
  46 my $curator = $hashref->{curator};
  47 my $submitter = $hashref->{submitter};
  48 my $sequencer = $hashref->{sequencer};
  49
  50 #############
  51 my $add_locus_link = $curator || $submitter || $sequencer  ?
  52   '<a href="javascript:Tools.toggleContent(\'associateLocusForm\', \'locus_network\');Tools.getOrganisms()">[Associate new locus]</a> ' :
  53   '<span class="ghosted">[Associate new locus]</span>' ;
  54 ############
  55
  56
  57 </%perl>
  58
  59
  60 <& /util/import_javascript.mas, classes => ["CXGN.Page.FormattingHelpers", "CXGN.Phenome.Locus", "CXGN.Phenome.Tools", "CXGN.Sunshine.NetworkBrowser"] &>
  61
  62
  63 <script language="javascript">
  64 </script>
  65
  66
  67 <& /page/page_title.mas, title=> "Gene family ". $genefamily->get_locusgroup_name &>
  68
  69 <&| /page/info_section.mas, title=>"Gene family details"  &>
  70
  71
  72   <& /page/form.mas,
  73   object_type          => 'locusgroup',
  74   object_id            => "$locusgroup_id",
  75   form_name            => 'genefamily_form',
  76   server_side_script   => '/jsforms/locusgroup_ajax_form.pl',
  77   form_div_name        => 'genefamily_details',
  78   js_object_name       => 'locusgroupForm',
  79   page_url             => "/genefamily/$locusgroup_id/view/",
  80   alternate_new_button => ''
  81   &>
  82
  83 </&>
  84
  85 <&| /page/info_section.mas,
  86     title       => "Gene family members",
  87     subtitle    => "$add_locus_link",
  88     id          => "locus_network",
  89     collapsible => 1,
  90     collapsed   => 0
  91 &>
  92
  93   <& /genefamily/manual/add_locus.mas, locusgroup_id=>$locusgroup_id &>
  94     <& /genefamily/manual/members.mas , locusgroup_id => $locusgroup_id, members_div => $members_div  &>
  95
  96 </&>
  97
  98 <& /page/comments.mas, object_type=>'locusgroup', object_id=>$locusgroup_id, referer=>$this_page &>
  99
 100