db/00082/AddDistributedSeedCrossCvterm.pm

   1 #!/usr/bin/env perl
   2
   3 =head1 NAME
   4
   5 AddDistributedSeedCrossCvterm.pm
   6
   7 =head1 SYNOPSIS
   8
   9 mx-run AddDistributedSeedCrossCvterm [options] -H hostname -D dbname -u username [-F]
  10
  11 this is a subclass of L<CXGN::Metadata::Dbpatch>
  12 see the perldoc of parent class for more details.
  13
  14 =head1 DESCRIPTION
  15
  16 This patch adds number of seeds distributed cvterms that can be stored in the nd_experimentprop table.
  17
  18 =head1 AUTHOR
  19
  20 Alex Ogbonna<baco46@cornell.edu>
  21
  22 =head1 COPYRIGHT & LICENSE
  23
  24 Copyright 2010 Boyce Thompson Institute for Plant Research
  25
  26 This program is free software; you can redistribute it and/or modify
  27 it under the same terms as Perl itself.
  28
  29 =cut
  30
  31
  32 package AddDistributedSeedCrossCvterm;
  33
  34 use Moose;
  35 use Bio::Chado::Schema;
  36 use Try::Tiny;
  37 extends 'CXGN::Metadata::Dbpatch';
  38
  39
  40 has '+description' => ( default => <<'' );
  41 This patch adds number of seeds distributed cvterms that can be stored in the nd_experimentprop table.
  42
  43
  44 sub patch {
  45   my $self=shift;
  46
  47   print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  48
  49   print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  50
  51   print STDOUT "\nExecuting the SQL commands.\n";
  52
  53   my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  54
  55   my $coderef = sub {
  56
  57     my $no_seeds_distrubuted = $schema->resultset("Cv::Cvterm")->create_with({
  58         name => 'number_of_seeds_distributed',
  59         cv   => 'nd_experiment_property',
  60     });
  61
  62   };
  63
  64   try {
  65     $schema->txn_do($coderef);
  66   } catch {
  67     die "Load failed! " . $_ .  "\n" ;
  68   };
  69
  70   print "You're done!\n";
  71
  72 }
  73
  74 ####
  75 1; #
  76 ####