db/00088/AddLabelDesignListType.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddLabelDesignListType.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run AddLabelDesignListType [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 Adds a list type to store label design params, one key and value per list item.
  18
  19 =head1 AUTHOR
  20
  21  Bryan Ellerbrock <bje24@cornell.edu>
  22
  23 =head1 COPYRIGHT & LICENSE
  24
  25 Copyright 2017 Boyce Thompson Institute for Plant Research
  26
  27 This program is free software; you can redistribute it and/or modify
  28 it under the same terms as Perl itself.
  29
  30 =cut
  31
  32
  33 package AddLabelDesignListType;
  34
  35 use Moose;
  36 use Bio::Chado::Schema;
  37 use Try::Tiny;
  38 extends 'CXGN::Metadata::Dbpatch';
  39
  40
  41 has '+description' => ( default => <<'' );
  42 This patch will create new cvterm 'label_design' in the 'list_type' cv.
  43
  44
  45 sub patch {
  46     my $self=shift;
  47
  48     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  49
  50     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  51
  52     print STDOUT "\nExecuting the SQL commands.\n";
  53
  54     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  55
  56     my $coderef = sub {
  57         my $label_design_list_type_cvterm = $schema->resultset("Cv::Cvterm")->create_with({
  58             name => 'label_design',
  59           definition => 'label_design',
  60             cv   => 'list_types',
  61         });
  62     };
  63
  64     try {
  65         $schema->txn_do($coderef);
  66
  67     } catch {
  68         die "Load failed! " . $_ .  "\n" ;
  69     };
  70
  71     print "You're done!\n";
  72 }
  73
  74
  75 ####
  76 1; #
  77 ####