mason/brapiclient/phenotyping_handhelds.mas

   1 <%args>
   2 </%args>
   3
   4 <& /util/import_javascript.mas, classes => [ 'brapi.Table' ] &>
   5
   6 <& /page/page_title.mas, title=>"Phenotyping Handhelds" &>
   7
   8 <h4>Database Select</h4>
   9 <select name="brapi_phenotyping_handhelds_url_select" id="brapi_phenotyping_handhelds_url_select" class="form-control" />
  10     <option value="">local</option>
  11     <option value="https://cassbase.org">cassbase.org</option>
  12     <option value="https://cassavabase.org">cassavabase.org</option>
  13     <option value="https://musabase.org">musabase.org</option>
  14     <option value="https://sweetpotatobase.org">sweetpotatobase.org</option>
  15     <option value="https://yambase.org">yambase.org</option>
  16     <option value="https://fernbase.org">fernbase.org</option>
  17     <option value="https://solgenomics.net">solgenomics.net</option>
  18 </select>
  19
  20 <br/><br/>
  21
  22 <div id="brapi_phenotyping_handhelds_layout_div" class="well">
  23
  24     <h3>Get Trial Layout(s)</h3>
  25
  26     <select name="brapi_phenotyping_handhelds_layout_format" id="brapi_phenotyping_handhelds_layout_format" class="form-control" />
  27         <option value="json">JSON</option>
  28         <option value="csv">CSV</option>
  29         <option value="tsv">TSV</option>
  30         <option value="xls">Excel (xls)</option>
  31     </select>
  32
  33     <div id="brapi_phenotyping_handhelds_studies_div">
  34     </div>
  35
  36     <div id="brapi_phenotyping_handhelds_layout_results_div">
  37     </div>
  38
  39 </div>
  40
  41 <div id="brapi_phenotyping_handhelds_traits_div" class="well">
  42
  43     <h3>Get Observation Variables</h3>
  44
  45     <div id="brapi_phenotyping_handhelds_traits_div">
  46     </div>
  47
  48     <div id="brapi_phenotyping_handhelds_traits_results_div">
  49     </div>
  50
  51 </div>
  52
  53 <div id="brapi_phenotyping_handhelds_upload_div" class="well">
  54
  55     <h3>Upload Phenotypes Using POST brapi/v1/studies/studyId/observationunits?observationLevel=observationLevel</h3>
  56
  57     <h4>Not yet implemented</h4>
  58
  59     <h3>Upload Phenotypes Using POST brapi/v1/studies/studyId/table</h3>
  60
  61     <h4>Not yet implemented</h4>
  62
  63 </div>
  64
  65 <script>
  66
  67 var selected_results = [];
  68 var studies_return_url;
  69 var traits_return_url;
  70
  71 jQuery(document).ready(function() {
  72
  73     brapi_phenotyping_handhelds_get_studies(jQuery('#brapi_phenotyping_handhelds_url_select').val());
  74     brapi_phenotyping_handhelds_get_traits(jQuery('#brapi_phenotyping_handhelds_url_select').val());
  75
  76     jQuery('#brapi_phenotyping_handhelds_url_select').change(function(){
  77         brapi_phenotyping_handhelds_get_studies(jQuery('#brapi_phenotyping_handhelds_url_select').val());
  78         brapi_phenotyping_handhelds_get_traits(jQuery('#brapi_phenotyping_handhelds_url_select').val());
  79     });
  80
  81     jQuery(document).on('click', '#brapi_table_select_submit_brapi_phenotyping_handhelds_studies_div', function(){
  82         jQuery.each(jQuery('input[name="brapi_table_select_'+studies_return_url+'"]:checked'), function(){
  83             if (jQuery.inArray(jQuery(this).val(), selected_results) == -1){
  84                 selected_results.push(jQuery(this).val());
  85             }
  86         });
  87         console.log(selected_results);
  88         var format = jQuery('#brapi_phenotyping_handhelds_layout_format').val();
  89         var url = jQuery('#brapi_phenotyping_handhelds_url_select').val();
  90
  91         for (var i=0; i<selected_results.length; i++){
  92             var return_url = url+'/brapi/v1/studies/'+selected_results[i]+'/layout?format='+format;
  93             jQuery.ajax( {
  94                 'url': return_url,
  95                 'beforeSend': function(){
  96                     jQuery('#working_modal').modal('show');
  97                 },
  98                 'success': function(response) {
  99                     //console.log(response);
 100                     if (response.metadata.datafiles.length > 0){
 101                         var html = "<h4>Download Layout File(s) From Here: <br/>";
 102                         for (var j=0; j<response.metadata.datafiles.length; j++){
 103                             html = html + "<a href='"+response.metadata.datafiles[j]+"'>"+response.metadata.datafiles[j]+"</a><br/>";
 104                         }
 105                         jQuery('#brapi_phenotyping_handhelds_layout_results_div').html(html);
 106                     } else {
 107                         brapi_create_paginated_table(response.result.data, response.metadata.pagination, 'brapi_phenotyping_handhelds_layout_results_div', return_url, undefined, {}, ['observationUnitName','replicate','germplasmName','blockNumber', 'X', 'Y', 'entryType', 'additionalInfo'], 'observationUnitName', []);
 108                     }
 109                     jQuery('#working_modal').modal('hide');
 110                 },
 111                 error: function(response) {
 112                     jQuery('#working_modal').modal('hide');
 113                     alert('An error occurred');
 114                 }
 115             });
 116         }
 117     });
 118
 119 });
 120
 121 function brapi_phenotyping_handhelds_get_studies(url) {
 122     studies_return_url = url+'/brapi/v1/studies-search';
 123     jQuery.ajax( {
 124         'url': url+'/brapi/v1/studies-search',
 125         'beforeSend': function(){
 126             jQuery('#working_modal').modal('show');
 127         },
 128         'success': function(response) {
 129             //console.log(response);
 130             brapi_create_paginated_table(response.result.data, response.metadata.pagination, 'brapi_phenotyping_handhelds_studies_div', studies_return_url, undefined, {}, ['studyName','trialName','programName','locationName'], 'studyDbId', []);
 131             jQuery('#working_modal').modal('hide');
 132         },
 133         error: function(response) {
 134             jQuery('#working_modal').modal('hide');
 135             alert('An error occurred');
 136         }
 137     });
 138 }
 139
 140 function brapi_phenotyping_handhelds_get_traits(url) {
 141     traits_return_url = url+'/brapi/v1/variables';
 142     jQuery.ajax( {
 143         'url': url+'/brapi/v1/variables',
 144         'beforeSend': function(){
 145             jQuery('#working_modal').modal('show');
 146         },
 147         'success': function(response) {
 148             //console.log(response);
 149             brapi_create_paginated_table(response.result.data, response.metadata.pagination, 'brapi_phenotyping_handhelds_traits_div', traits_return_url, undefined, {}, ['observationVariableDbId','name','ontologyName','trait','method','scale'], 'name', []);
 150             jQuery('#working_modal').modal('hide');
 151         },
 152         error: function(response) {
 153             jQuery('#working_modal').modal('hide');
 154             alert('An error occurred');
 155         }
 156     });
 157 }
 158
 159 </script>