mason/solgs/model/combined/populations/trait.mas

   1 <%args>
   2
   3 $accuracy_report
   4 $top_blups
   5 $blups_download_url
   6 $marker_effects_download_url
   7 $top_marker_effects
   8 $validation_download_url
   9 $trait_abbr
  10 $trait_name
  11 $project_name
  12 $project_desc
  13 $stocks_no
  14 $markers_no
  15 $trait_id
  16 $combo_pops_id
  17 $trait_combo_pops
  18 $descriptive_stat
  19 $download_prediction => ''
  20 $prediction_pop_id => ''
  21 $list_of_prediction_pops =>''
  22 $prediction_pop_name => ''
  23 $analyzed_traits =>''
  24 $owner =>''
  25 $protocol
  26 $model_parameters
  27
  28 </%args>
  29
  30 <%perl>
  31
  32 </%perl>
  33
  34 <& /util/import_javascript.mas, classes => [ "solGS.phenotypeDataFlot", "solGS.traitGebvFlot",
  35                                              "flot.flot", "flot.categories",
  36                                              "flot.tooltip", "flot.selection", "flot.navigate",
  37                                              "flot.axisLabels", "statistics/simple_statistics"
  38                                            ]
  39 &>
  40
  41 <link rel="stylesheet" href="/static/css/solgs/solgs.css" type="text/css" />
  42
  43 <& /page/page_title.mas,
  44    title => "Genomic selection model for $trait_name ($trait_abbr) in $project_name"
  45 &>
  46
  47 <&| /page/info_section.mas,
  48   collapsible => 1,
  49   collapsed   => 0,
  50   title       => "Training population summary",
  51 &>
  52
  53 % $project_name = "<a href=\"/solgs/populations/combined/$combo_pops_id\">$project_name</a>";
  54
  55 <& summary.mas,
  56     project_name => $project_name,
  57     project_desc => $project_desc,
  58     stocks_no    => $stocks_no,
  59     markers_no   => $markers_no,
  60     owner        => $owner,
  61     protocol     => $protocol,
  62 &>
  63
  64 </&>
  65
  66 <&| /page/info_section.mas,
  67     collapsible => 1,
  68     collapsed   => 0,
  69     title       => "Trait phenotype data"
  70 &>
  71
  72 <& /solgs/population/trait_phenotype_data.mas,
  73   combo_pops_id    => $combo_pops_id,
  74   trait_id         => $trait_id,
  75   descriptive_stat => $descriptive_stat,
  76 &>
  77
  78 </&>
  79
  80 <& /solgs/model/pca.mas &>
  81
  82 <& /solgs/model/accuracy.mas,
  83    accuracy_report        => $accuracy_report,
  84   validation_download_url => $validation_download_url
  85 &>
  86
  87 <& /solgs/model/model_parameters.mas,
  88    model_parameters => $model_parameters,
  89 &>
  90
  91 <& /solgs/model/top_blups.mas,
  92    top_blups          => $top_blups,
  93    blups_download_url => $blups_download_url,
  94 &>
  95
  96 <& /solgs/model/marker_effects.mas,
  97    top_marker_effects          => $top_marker_effects,
  98    marker_effects_download_url => $marker_effects_download_url
  99 &>
 100
 101 <& /solgs/population/selection_populations.mas,
 102    download_prediction     => $download_prediction,
 103    analyzed_traits         => $analyzed_traits,
 104    pop_id                  => $combo_pops_id,
 105    prediction_pop_id       => $prediction_pop_id,
 106    list_of_prediction_pops => $list_of_prediction_pops,
 107    prediction_pop_name     => $prediction_pop_name,
 108    project_name            => $project_name,
 109 &>
 110