mason/breeders_toolbox/treatment.mas

   1
   2 <%doc>
   3
   4 =head1 NAME
   5
   6 /breeders_toolbox/treatment.mas - a mason component to display a treatment detail page
   7
   8 =head1 AUTHOR
   9
  10
  11 =cut
  12
  13 </%doc>
  14
  15 <%args>
  16 $trial_id
  17 $trial_name
  18 $breeding_program_id
  19 $breeding_program_name
  20 $location_id
  21 $location_name
  22 $year => undef
  23 $trial_type => undef
  24 $planting_date => undef
  25 $harvest_date => undef
  26 $trial_description => undef
  27 $user_can_modify => undef
  28 $has_plant_entries => undef
  29 $has_subplot_entries => undef
  30 $hidap_enabled => undef
  31 $folder_name => undef
  32 $folder_id => undef
  33 $plants_per_plot => undef
  34 $has_expression_atlas => undef
  35 $expression_atlas_url => undef
  36 $site_project_name => undef
  37 $trial_phenotype_files => undef
  38 $sgn_session_id => undef
  39 $user_name => undef
  40 $design_name => undef
  41 $phenotypes_fully_uploaded => undef
  42 $identifier_prefix => 'SGN'
  43 </%args>
  44
  45 <style>
  46
  47 @media (min-width: 1200px) {
  48     .affix {
  49         top:100px;
  50         right:0;
  51         position:fixed;
  52     }
  53 }
  54
  55 </style>
  56
  57 <& /util/import_javascript.mas, classes => [ 'jquery.iframe-post-form', 'CXGN.Trial' , 'jstree/dist/jstree', 'CXGN.BreedersToolbox.HTMLSelect', 'moment_min', 'daterangepicker' ] &>
  58
  59 <%perl>
  60   use Data::Dumper;
  61 my $start_time = time();
  62
  63 #print STDERR "Check 7 (mason) : ".(time() - $start_time)."\n";
  64
  65 </%perl>
  66
  67 <br/>
  68
  69
  70 <& /page/page_title.mas, title=>"Treatment detail for ".$trial_name &>
  71
  72 <&| /page/info_section.mas, title=>"Trial details",  collapsible => 1 &>
  73
  74
  75 <div class="panel panel-default">
  76 <table class="table table-hover" >
  77
  78 <tr>
  79 <td><b>Treatment Name</b></td>
  80 <td>
  81 <div id="trial_name">
  82 % if ($trial_name) {
  83 %   print "$trial_name";
  84 % } else {
  85 %   print "[No Trial Name]";
  86 % }
  87 </div>
  88 </td>
  89 </tr>
  90
  91 </table>
  92 </div>
  93
  94
  95 </&>
  96
  97
  98 <!--<style>
  99   div.left {
 100     float: left;
 101     clear: both;
 102   }
 103 .ui-autocomplete {
 104   max-height: 100px;
 105   overflow-y: auto;
 106   /* prevent horizontal scrollbar */
 107   overflow-x: hidden;
 108 }
 109
 110 </style> -->
 111
 112 <&| /page/info_section.mas, id => "trial_design_section", title=>"Design", collapsible=>1, collapsed=>0 &>
 113
 114 <div class="well well-sm">
 115
 116 <&| /page/info_section.mas, id => "trial_accessions", title=>"Accessions", is_subsection => 1, collapsible=>1, collapsed=>1 &>
 117
 118 <& /breeders_toolbox/trial/trial_accessions.mas, trial_id => $trial_id &>
 119
 120 </&>
 121
 122 <&| /page/info_section.mas, id => "trial_controls", title=>"Controls",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 123
 124 <& /breeders_toolbox/trial/trial_controls.mas, trial_id => $trial_id &>
 125
 126 </&>
 127
 128 <&| /page/info_section.mas, id => "trial_plots", title=>"Plots",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 129
 130 <& /breeders_toolbox/trial/trial_plots.mas, trial_id => $trial_id &>
 131
 132 </&>
 133
 134 % if ($has_subplot_entries) {
 135
 136 <&| /page/info_section.mas, id => "trial_subplots", title=>"Subplots",  is_subsection => 1, collapsible=>1, collapsed=>1 &>
 137
 138 <& /breeders_toolbox/trial/trial_subplots.mas, trial_id => $trial_id &>
 139
 140 </&>
 141
 142 % }
 143
 144 % if ($has_plant_entries) {
 145
 146 <&| /page/info_section.mas, id => "trial_plants", title=>"Plant Entries", is_subsection => 1, collapsible=> 1, collapsed=>1 &>
 147
 148 <& /breeders_toolbox/trial/trial_plants.mas, trial_id => $trial_id &>
 149
 150 </&>
 151
 152 % }
 153
 154 </div><!-- closes well -->
 155
 156 </&>
 157
 158 <& /breeders_toolbox/trial/download_phenotypes_dialog.mas, trial_ids => $trial_id, dialog_name => $trial_name, dialog_type => 'Trial' &>
 159
 160
 161 <&| /page/info_section.mas, id=> "trial_detail_traits_assayed", title => "Traits assayed", collapsible=>1, collapsed=>1, hide_if_empty=>1, subtitle=>"[<a id='trial_download_phenotypes_button'>Download Phenotype Data</a>]" &>
 162
 163 <& /breeders_toolbox/trial/phenotype_summary.mas, trial_id => $trial_id &>
 164
 165 </&>
 166
 167
 168 <&| /page/info_section.mas, title=>"Files", collapsible=>1, collapsed=>0 &>
 169
 170 <div class="well well-sm">
 171
 172   <&| /page/info_section.mas, title=>"Uploaded Phenotyping Files", is_subsection => 1, collapsible=>1, collapsed=>0 &>
 173
 174   <table class="table table-bordered files_datatables" alt="">
 175   <thead>
 176     <tr><th>Filename</th><th>Date Uploaded</th><th>Uploaded By</th><th>File Type</th><th>Options</th></tr>
 177   </thead>
 178   <tbody>
 179 % foreach my $f (@$trial_phenotype_files) {
 180     <tr>
 181       <td><% $f->[4] %></td>
 182       <td><% $f->[1] %></td>
 183       <td><a href="/solpeople/profile/<% $f->[2] %>"><% $f->[3] %></a></td>
 184       <td><% $f->[6] %></td>
 185       <td><a href="/breeders/phenotyping/view/<% $f->[0] %>">View</a> | <a href="/breeders/phenotyping/download/<% $f->[0] %>">Download</a></td>
 186     </tr>
 187 % }
 188   </tbody>
 189   </table>
 190
 191   </&><!-- closes uploaded file section -->
 192
 193 </div><!-- closes well -->
 194
 195 </&><!-- closes entire phenotyping file section -->
 196
 197 % my $data_agreement_link = "Add/edit data agreement";
 198 % if ($user_can_modify) { $data_agreement_link = '[<a id="add_data_agreement">Add/edit data agreement</a>]'; }
 199 <&| /page/info_section.mas, title=>"Data Agreement", is_subsection => 0, collapsible=>1, collapsed=>0,  subtitle=> $data_agreement_link  &>
 200
 201 <& /breeders_toolbox/data_agreement.mas, trial_id => $trial_id &>
 202
 203 </&>
 204
 205
 206 <div id="trialIDDiv" class="trialIDDivClass" style="display:none;">
 207 % print $trial_id;
 208 </div>
 209
 210 <script defer="defer">
 211
 212 jQuery(document).ready(function () {
 213
 214   trial_detail_page_setup_dialogs();
 215
 216 });
 217
 218 </script>