mason/breeders_toolbox/manage_upload.mas

   1 <%args>
   2 $locations
   3 $geojson_locations
   4 $breeding_programs
   5 $timestamp
   6 $preferred_species => ""
   7 $editable_stock_props => {}
   8 $facilities => ()
   9 $management_factor_types => ()
  10 </%args>
  11
  12 <& /util/import_javascript.mas, classes => [ 'bootstrap_min.js', 'jquery.iframe-post-form','CXGN.List', 'CXGN.BreedersToolbox.AddTrial','CXGN.BreedersToolbox.UploadTrial','CXGN.BreedersToolbox.Trial', 'CXGN.Trial','CXGN.BreedersToolbox.GenotypingTrial','CXGN.BreedersToolbox.Accessions', 'CXGN.BreedersToolbox.UploadPedigrees','CXGN.BreedersToolbox.Crosses','CXGN.BreedersToolbox.FieldBook','CXGN.BreedersToolbox.UploadPhenotype', 'CXGN.BreederSearch', 'CXGN.Trial','CXGN.TrialTreeFolders' ] &>
  13
  14 <& /page/page_title.mas, title=>"Upload Data" &>
  15
  16 <style>
  17 .ui-autocomplete {
  18     z-index: 5000;
  19 }
  20 </style>
  21
  22 <div class="container-fluid">
  23
  24 <div class="well well-sm">
  25 <h1>Traits</h1><br/>
  26 <table class="table table-bordered">
  27 <thead>
  28 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  29 </thead>
  30 <tbody>
  31 <tr>
  32 <td>
  33 <a href="http://submit.rtbbase.org"><p>Go To Trait Request Form</p></a>
  34 </td>
  35 <td>
  36 <a href="/tools/onto"><p>Go To Ontology Browser</p></a>
  37 </td>
  38 <td>
  39 <a href="/search/traits"><p>Go To Trait Search</p></a>
  40 </td>
  41 </tr>
  42 </tbody>
  43 </table>
  44 </div>
  45
  46 <div class="well well-sm">
  47 <h1>Field Trials</h1><br/>
  48 <table class="table table-bordered">
  49 <thead>
  50 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  51 </thead>
  52 <tbody>
  53 <tr>
  54 <td>
  55 <a name="upload_trial_link"><p>Upload An Existing Trial</p></a>
  56 <a id="add_project_link"><p>Design A New Trial</p></a>
  57 </td>
  58 <td>
  59 <a href="/breeders/trials"><p>Go To Manage Trials</p></a>
  60 </td>
  61 <td>
  62 <a href="/search/trials"><p>Go To Trial Search</p></a>
  63 </td>
  64 </tr>
  65 </tbody>
  66 </table>
  67 </div>
  68 <& /breeders_toolbox/trial/trial_create_dialogs.mas, locations => $geojson_locations, breeding_programs => $breeding_programs, management_factor_types => $management_factor_types &>
  69 <& /breeders_toolbox/trial/trial_upload_dialogs.mas, locations => $geojson_locations, breeding_programs => $breeding_programs &>
  70
  71 <div class="well well-sm">
  72 <h1>Genotyping Plates</h1><br/>
  73 <table class="table table-bordered">
  74 <thead>
  75 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  76 </thead>
  77 <tbody>
  78 <tr>
  79 <td>
  80 <a name="create_genotyping_trial_link"><p>Create An IGD Genotyping Plate</p></a>
  81 </td>
  82 <td>
  83 <a href="/breeders/genotyping"><p>Go To Manage Genotyping Plates</p></a>
  84 </td>
  85 <td>
  86 <a href="/search/trials"><p>Go To Trial Search</p></a>
  87 </td>
  88 </tr>
  89 </tbody>
  90 </table>
  91 </div>
  92 <& /breeders_toolbox/genotyping_trials/create_genotyping_trial_dialogs.mas, facilities => $facilities &>
  93
  94 <div class="well well-sm">
  95 <h1>Locations</h1><br/>
  96 <table class="table table-bordered">
  97 <thead>
  98 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
  99 </thead>
 100 <tbody>
 101 <tr>
 102 <td>
 103 <a id="upload_locations_link"><p>Upload Many New Locations</p></a>
 104 </td>
 105 <td>
 106 <a href="/breeders/locations"><p>Go To Manage Locations</p></a>
 107 </td>
 108 <td>
 109 <a href="/breeders/locations"><p>Go To Manage Locations</p></a>
 110 </td>
 111 </tr>
 112 </tbody>
 113 </table>
 114 </div>
 115 <& /breeders_toolbox/upload_locations_dialogs.mas &>
 116
 117 <div class="well well-sm">
 118 <h1>Accessions</h1><br/>
 119 <table class="table table-bordered">
 120 <thead>
 121 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 122 </thead>
 123 <tbody>
 124 <tr>
 125 <td>
 126 <a name="add_accessions_link"><p>Add Accessions Using List</p></a>
 127 </td>
 128 <td>
 129 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 130 </td>
 131 <td>
 132 <a href="/search/stocks"><p>Go To Accessions Search</p></a>
 133 </td>
 134 </tr>
 135 </tbody>
 136 </table>
 137 </div>
 138 <& /breeders_toolbox/add_accessions_dialogs.mas, preferred_species=>$preferred_species, editable_stock_props=>$editable_stock_props &>
 139
 140 <div class="well well-sm">
 141 <h1>Populations</h1><br/>
 142 <table class="table table-bordered">
 143 <thead>
 144 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 145 </thead>
 146 <tbody>
 147 <tr>
 148 <td>
 149 <a id="manage_accessions_populations_new"><p>Add New Population</p></a>
 150 </td>
 151 <td>
 152 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 153 </td>
 154 <td>
 155 <a href="/search/stocks"><p>Go To Stock Search</p></a>
 156 </td>
 157 </tr>
 158 </tbody>
 159 </table>
 160 </div>
 161 <& /breeders_toolbox/manage_populations_dialogs.mas &>
 162
 163
 164 <div class="well well-sm">
 165 <h1>Seedlots</h1><br/>
 166 <table class="table table-bordered">
 167 <thead>
 168 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 169 </thead>
 170 <tbody>
 171 <tr>
 172 <td>
 173 <a name="seedlot_bulk_upload"><p>Upload Many Seedlots</p></a>
 174 <a name="add_seedlot_button"><p>Add A Seedlot</p></a>
 175 </td>
 176 <td>
 177 <a href="/breeders/seedlots"><p>Go To Manage Seedlots Page</p></a>
 178 </td>
 179 <td>
 180 <a href="/breeders/seedlots"><p>Go To Manage Seedlots Page</p></a>
 181 </td>
 182 </tr>
 183 </tbody>
 184 </table>
 185 </div>
 186 <& /breeders_toolbox/upload_seedlots_dialogs.mas &>
 187 <& /breeders_toolbox/add_seedlot_dialogs.mas, timestamp=>$timestamp &>
 188
 189 <div class="well well-sm">
 190 <h1>Pedigrees</h1><br/>
 191 <table class="table table-bordered">
 192 <thead>
 193 <tr><th>Add</th><th>Manage</th><th>Search</th></tr>
 194 </thead>
 195 <tbody>
 196 <tr>
 197 <td>
 198 <a id="upload_pedigrees_link"><p>Upload Many Pedigrees</p></a>
 199 </td>
 200 <td>
 201 <a href="/breeders/accessions"><p>Go To Manage Accessions Page</p></a>
 202 </td>
 203 <td>
 204 <a href="/search/cross"><p>Go To Search Crosses</p></a>
 205 </td>
 206 </tr>
 207 </tbody>
 208 </table>
 209 </div>
 210 <& /breeders_toolbox/upload_pedigrees_dialogs.mas &>
 211
 212 <div class="well well-sm">
 213 <h1>Crosses</h1><br/>
 214 <table class="table table-bordered">
 215 <thead>
 216 <tr><th>Plan</th><th>Add</th><th>Manage</th><th>Search</th></tr>
 217 </thead>
 218 <tbody>
 219 <tr>
 220 <td>
 221 <a id="create_cross_wishlist" >Create Cross Wishlist</a>
 222 </td>
 223 <td>
 224 <a name="upload_crosses_link"><p>Upload Many New Crosses</p></a>
 225 <a name="create_cross_link"><p>Add A Cross</p></a>
 226 <a id="upload_progenies_existing_crosses"><p>Upload Progenies of Existing Crosses</p></a>
 227 <a id="upload_cross_info"><p>Upload Cross Info of Existing Crosses</p></a>
 228 </td>
 229 <td>
 230 <a href="/breeders/crosses"><p>Go To Manage Crosses Page</p></a>
 231 </td>
 232 <td>
 233 <a href="/search/cross"><p>Go To Search Crosses</p></a>
 234 </td>
 235 </tr>
 236 </tbody>
 237 </table>
 238 </div>
 239 <& /breeders_toolbox/cross_wishlist.mas &>
 240 <& /breeders_toolbox/add_cross_dialogs.mas, programs=>$breeding_programs, locations=>$geojson_locations &>
 241 <& /breeders_toolbox/upload_crosses_dialogs.mas, programs=>$breeding_programs, locations=>$geojson_locations &>
 242 <& /breeders_toolbox/cross/upload_update_crosses.mas &>
 243
 244
 245 <div class="well well-sm">
 246 <h1>Phenotypes</h1><br/>
 247 <table class="table table-bordered">
 248 <thead>
 249 <tr><th>Collection</th><th>Add</th><th>Manage</th><th>Search</th></tr>
 250 </thead>
 251 <tbody>
 252 <tr>
 253 <td>
 254 <a name="create_fieldbook_link"><p>Create Fieldbook Layout File</p></a>
 255 <a id="create_new_trait_file_link"><p>Create Fieldbook Trait File</p></a>
 256 <a name="create_spreadsheet_link"><p>Create Phenotyping Spreadsheet</p></a>
 257 </td>
 258 <td>
 259 <a id="upload_fieldbook_phenotypes_link"><p>Upload Fieldbook Database File</p></a>
 260 <a id="upload_spreadsheet_phenotypes_link"><p>Upload Phenotyping Spreadsheet</p></a>
 261 </td>
 262 <td>
 263 <a href="/breeders/phenotyping"><p>Go To Manage Phenotypes Page</p></a>
 264 </td>
 265 <td>
 266 <a href="/breeders/search"><p>Go To Search Wizard</p></a>
 267 </td>
 268 </tr>
 269 </tbody>
 270 </table>
 271 </div>
 272 <& /fieldbook/create_fieldbook_dialog.mas &>
 273 <& /fieldbook/create_trait_file_dialog.mas &>
 274 <& /fieldbook/upload_phenotype_fieldbook.mas &>
 275 <& /breeders_toolbox/upload_phenotype_spreadsheet.mas &>
 276 <& /breeders_toolbox/trial/create_spreadsheet_dialog.mas &>
 277
 278 </div>