mason/breeders_toolbox/index.mas

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   2 <%doc>
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   6 <style type="text/css">
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   9     div.page_introduction {
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  13     #icon_nav {
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  19     .SNPTool {
  20         position: relative;
  21         top: 150px;
  22         left: 100px;
  23     }
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  25     .SNPToolSubMenu {
  26         background-image: url(../images/MapsMarkersSub.png);
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  38     .Markers {
  39         position: relative;
  40         top: 160px;
  41         left: 410px;
  42     }
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  44     .MarkersSubMenu {
  45         background-image: url(../images/MapsMarkersSub.png);
  46         width: 227px;
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  55     .Traits {
  56         position: relative;
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  61     .TraitsSubMenu {
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  69     }
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  74     .QTLTool {
  75         position: relative;
  76         top: 160px;
  77         left: 190px;
  78     }
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  80     .QTLToolSubMenu {
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  90
  91 </style>
  92
  93 <& /page/page_title.mas, title=>'SGN Breeders Toolbox' &>
  94
  95 <div class="page_introduction">
  96 <p>The purpose of this page is to give breeders direct links to
  97 breeder-relevant tools and data on SGN. It is a work in progress and
  98 your feedback or suggestions are welcome to build this into a
  99 comprehensive, easy to use and breeder-friendly resource.</p>
 100
 101 <p>We love feedback!  Please contact <a href="mailto:jv27\@cornell.edu">Joyce van Eck</a>
 102 with suggestions for improvements!</p>
 103 </div>
 104
 105 <div id="icon_nav">
 106 <ul>
 107
 108
 109         <li class="SNPTool"><!-- a href="#" --><img src="/documents/img/breedericonmenu/SNPTool.png" alt="SNP Tool" title="SNP Tool (coming soon)" ><!-- /a -->
 110         <!--
 111                 <ul>
 112             <div class="SNPToolSubMenu">
 113                 <li><a href="#">Test...1</a></li>
 114                 <li><a href="#">Test...2</a></li>
 115                 <li><a href="#">Test...3</a></li>
 116             </div>
 117         </ul>
 118         -->
 119         </li>
 120
 121      <li class="Markers"><a href="/search/markers/markersearch.pl"><img src="/documents/img/breedericonmenu/Markers.png" alt="Markers" title="Maps &amp; Markers"  /></a>
 122         <!--
 123                 <ul>
 124             <div class="MarkersSubMenu">
 125                 <li><a href="#">Test...1</a></li>
 126                 <li><a href="#">Test...2</a></li>
 127                 <li><a href="#">Test...3</a></li>
 128             </div>
 129         </ul>
 130         -->
 131         </li>
 132
 133         <li class="Traits"><a href="/search/direct_search.pl?search=trait"><img src="/documents/img/breedericonmenu/Traits.png" alt="Traits" title="Traits &amp; Phenotypes" /></a>
 134         <!--
 135                 <ul>
 136             <div class="TraitsSubMenu">
 137                 <li><a href="#">Test...1</a></li>
 138                 <li><a href="#">Test...2</a></li>
 139                 <li><a href="#">Test...3</a></li>
 140             </div>
 141         </ul>
 142         -->
 143         </li>
 144
 145         <li class="QTLTool"><a href="/search/direct_search.pl?search=qtl"><img src="/documents/img/breedericonmenu/QTLTool.png" alt="QTL Tool" title="Access QTL data" /></a>
 146         <!--
 147                 <ul>
 148             <div class="QTLToolSubMenu">
 149                 <li><a href="#">Test...1</a></li>
 150                 <li><a href="#">Test...2</a></li>
 151                 <li><a href="#">Test...3</a></li>
 152             </div>
 153         </ul>
 154         -->
 155         </li>
 156
 157 </ul>
 158 </div>
 159
 160 <&| /page/info_section.mas, title=>'SGN tools' &>
 161 <ul>
 162   <li>Browse the SGN <a href="/search/direct_search.pl?search=markers/">Markers database</a></li>
 163   <li>Browse available controlled vocabularies using the SGN <a href="/tools/onto/">Ontology browser</a></li>
 164   <li>Develop CAPS markers using the <a href="/tools/caps_designer/caps_input.pl">CAPS Designer</a></li>
 165   <li>Check intron locations in transript data using the <a href="/tools/intron_detection/find_introns.pl">Intron Finder</a></li>
 166   <li><a href="/phenome/qtl_form.pl">QTL data submssion</a> and on-the-fly QTL analysis <a href="/search/direct_search.pl?search=cvterm_name/">for Solanaceae traits</a></li>
 167   <li>SGN gene and phenotype <a href="/phenome/">submission guide</a> </li>
 168 </ul>
 169 </&>
 170
 171 <&| /page/info_section.mas, title=>'Tools in development' &>
 172 <ul><li>SNP discovery tool. This will be part of the <a href="https://www.msu.edu/~douchesd/solcapwebpage.htm">SolCAP</a> project.</li></ul>
 173 </&>
 174
 175 <&| /page/info_section.mas, title=>'Links' &>
 176 <ul>
 177 <li><a href="http://www.tomatomap.net/">TomatoMap.Net</a> - a site for Tomato Genetics at Ohio State University.</li>
 178 <li><a href="http://solcap.msu.edu/">SolCAP</a> - the official SolCAP website at Michigan State University.</li>
 179 <li><a href="http://www.oardc.ohio-state.edu/vanderknaap/tomato_analyzer.htm">Tomato Analyzer</a> - software for scoring fruit shape and other shapes.</li>
 180 <li><a href="/help/index.pl#submit">Submitting data to SGN</a> - instruction for data submissions to SGN.</li>
 181 </ul>
 182 </&>
 183
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 185 <& /util/import_javascript.mas, classes => [qw[ icon_nav ]] &>
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