mason/links/related_sites.mas

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   8         <td>
   9           <h4>Solanaceae Resources on the Web</h4>
  10
  11           <table summary="">
  12             <tr>
  13               <td width="20">&nbsp;</td>
  14
  15               <td>
  16                 <strong>Solanaceae Systematics, Descriptions,
  17                 Images</strong>
  18
  19                 <dl>
  20
  21                   <dt><br /><a href="http://solcap.msu.edu" target="_new" >SolCAP</a></dt>
  22                   <dd>The official website of the USDA sponsored Solanaceae Coordinated Agricultural Project (SolCAP), which will phenotype and genotype large panels of tomato and potato accessions. Results will also be made available on SGN.</dd>
  23                   <dt><a href=
  24                   "http://www.nhm.ac.uk/research-curation/projects/solanaceaesource/" target="_new">Solanum
  25                   Source</a></dt>
  26
  27                   <dd>The official website of the Solanum PBI
  28                   project, containing species descriptions,
  29                   specimen data from herbaria, nomenclatural data
  30                   about names and their places of publication, and
  31                   a bibliography of scientific articles about
  32                   members of the family.</dd>
  33
  34                   <dt><br /><a href=
  35                   "http://www.bgard.science.ru.nl/" target="_new">Nijmegen
  36                   Botanical and Experimental Garden</a> in the
  37                   Netherlands</dt>
  38
  39                   <dd>A botanical garden with one of the major
  40                   collections of Solanaceae plants.</dd>
  41
  42                   <dt><br /><a href="http://cnia.inta.gov.ar/lat-sol" target="_new">Lat-SOL</a></dt>
  43                    <dd>The Latin American SOL initiative</dd>
  44                 </dl>
  45
  46                 <strong>Tomato Resources</strong>
  47
  48
  49
  50                 <dl>
  51                   <dt><a href="http://tomatoma.nbrp.jp/index.jsp" target="_new"> TOMATOMA Database</a>
  52     </dt>
  53     <dd>A database of EMS and Neutron mutants in the MicroTom background in Japan.</dd>
  54
  55     <dt><a href="http://www.agrobios.it/tilling" target="_new"> LycoTILL</a></dt>
  56 <dd>  LycoTILL is an interactive and evolving database which allows search on-line of images and phenotype data of the  tomato (cv /Red Setter/) mutant collection generated with EMS mutagenesis experiments.
  57 The Red Setter mutant population was developed for TILLING applications but can also be used  for forward  genetic studies.</dd>
  58
  59                   <dt><a href="http://phn.huji.ac.il/RTQ/" target="_new" >Phenom Networks</a></dt>
  60                   <dd>The Phenom Network engine by Dani Zamir and Yaniv Semel represents knowledge of complex traits and has tomato ILs, barley and rose traits with more organisms being added soon.</dd>
  61
  62                   <dt><a href="http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/" target="_new" >Tomato SNP database</a></dt>
  63                   <dd>A tomato SNP website by Jose Jimenez and Julin Maloof at UC Davis</dd>
  64
  65                   <dt><br /><a href=
  66                   "http://www.kazusa.or.jp/jsol/microtom/index.html" target="_new">MiBASE</a>, the Kazusa
  67                   Microtom Site</dt>
  68
  69                   <dd>EST and unigene dataset from Microtom,
  70                   including GO annotations and Pathway Viewer.</dd>
  71
  72                   <dt><br /><a href="http://www.pgb.kazusa.or.jp/kaftom/" target="_new" >KaFTom</a></dt>
  73                   <dd>The Kazusa Micro-Tom full-length cDNA Site</dd>
  74
  75                   <dt><br /><a href="http://tgc.ifas.ufl.edu" target="_new">The
  76                   Tomato Genetics Cooperative</a></dt>
  77
  78                   <dd>Homepage of the Tomato Genetics Cooperative
  79                   with access to publications on-line.</dd>
  80
  81                   <dt><br /><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
  82                   Genetic Resource Center (TGRC)</a></dt>
  83
  84                   <dd>Large collection of Solanaceae germplasms,
  85                   with a special focus on tomato.</dd>
  86
  87                   <dt><br /><a href=
  88                   "http://zamir.sgn.cornell.edu/mutants/" target="_new">Genes
  89                   that make Tomatoes</a></dt>
  90
  91                   <dd>Website of a large scale tomato mutagenesis
  92                   and phenotyping project.</dd>
  93
  94                   <dt><br /><a href="http://ted.bti.cornell.edu/" target="_new" >Tomato
  95     Expression Database (TED)</a></dt>
  96
  97                   <dd>Site dedicated to tomato microarrays.</dd>
  98
  99                   <dt><br /><a href=
 100                   "http://www.tomato.org/" target="_new">California Tomato Commission</a></dt>
 101
 102                   <dd>The website of the California Tomato Grower\'s
 103                   Association. Contains nutritional information and
 104                   recipes.</dd>
 105
 106                   <dt><br /><a href=
 107                   "http://www.gardenmosaics.cornell.edu/pgs/science/english/tomatoes.htm" target="_new" >
 108                   Garden Mosaics Science Pages about
 109                   Tomato</a></dt>
 110
 111                   <dd>A website with many pages for teaching about
 112                   plants and plant science, this page for teaching
 113                   about tomatoes.</dd>
 114
 115                   <dt><br /><a href="http://www.ars.usda.gov/Main/site_main.htm?modecode=19-10-05-00" target="_new" >USDA ARS Bioinformatics Homepage</a></dt>
 116
 117                   <dd>The website of the USDA bioinformatics unit
 118                   in Geneva, NY</dd>
 119
 120                   <dt><br /><a href=
 121                   "http://solcap.msu.edu/" target="_new" >
 122                   SolCAP project</a></dt>
 123                   <dd>The Solanaceae Coordinated Agriculture Project</dd>
 124
 125                   <dt><br /><a href=
 126                   "https://www.eu-sol.wur.nl" target="_new" >EU-SOL Tomato Core Collection Phenotype Database</a></dt>
 127                   <dd>The Tomato Core Collection Phenotype Database by the <a href="http://www.eu-sol.net">EU-SOL</a> Project funded by the 6th framework program of the European Union.</dd>
 128
 129                   <dt><br /><a href=
 130                   "http://tomato.nbrp.jp/indexEn.html" target="_new" >Tomato National BioResource Project</a></dt>
 131                   <dd>The National BioResource Project (NBRP) is a national project that aims to collect, preserve, and provide bioresources for life sciences research.</dd>
 132
 133                 </dl>
 134                 <strong>Tomatoes - gardening and heirloom varieties</strong>
 135                 <dl>
 136                 <dt><a href="http://www.tomatogardeningguru.com/" target="_new" >www.tomatogardeningguru.com</a></dt>
 137                 <dd>A website about growing tomatoes organically</dd>
 138                 <dt><a href="http://www.tomatofest.com" target="_new" >TomatoFest.com</a></dt>
 139                 <dd>Heirloom tomato fest</dd>
 140                 </dl>
 141                 <strong>Tomatoes - the lighter side</strong>
 142                 <dl>
 143                 <dt><a href="http://tomatoesareevil.com" target="_new">TomatoesAreEvil.com</a></dt>
 144                 <dd>A website by tomato haters (that\'s definitely not us!)</dd>
 145                 <dt><br /><a href="http://killertomatoes.com" target="_new" >Killertomatoes.com</a></dt>
 146
 147                 <strong>Potato Resources</strong>
 148
 149                 <dl>
 150                   <dt><a href="http://www.public.iastate.edu/~djh/">Potato Phloem Biology Project</a>
 151                  </dt>
 152                   <dd>An NSF funded project to study signaling networks that are involved in the induction of tuber formation.</dd>
 153 </dl>
 154
 155
 156                 <dl>
 157
 158                   <dt><a href="http://www.potatodiseases.org/" target="_new" >PotatoDiseases.org</a></dt>
 159                   <dd>A site describing diseases of potato from the University of Michigan.</dd>
 160
 161                   <dt><a href="http://www.cpgp.ca" target="_new" >Canadian Potato Genome Project</a></dt>
 162                   <dd>The Canadian Potato Genome Project (CPGP) was launched in 2002 to develop resources in gene discovery in potatoes, for use by Canadian researchers and their partners.</dd>
 163
 164                   <dt><a href="https://gabi.rzpd.de/PoMaMo.html" target="_new" >PoMaMo
 165                   Database</a></dt>
 166
 167                   <dd>Potato genome data from the Max-Planck
 168                   Institute for Plant Breeding Research, Cologne,
 169                   Germany, which includes SNP data, maps, marker
 170                   sequences, references and more.</dd>
 171
 172                   <dt><br /><a href="http://www.cipotato.org" target="_new" >Centro
 173                   Internacional de la Papa</a> (International
 174                   Potato Center, Peru)</dt>
 175
 176                   <dd>The International Potato Center in Lima,
 177                   Peru, with potato specific databases and
 178                   resources, such as the <a href=
 179                   "http://grcc.cip.cgiar.org/genebank/" target="_new">CIP Potato
 180                   Genebank</a> and the <a href=
 181                   "http://wpa.riu.cip.cgiar.org/index.php" target="_new" >World Potato
 182                   Atlas</a></dd>
 183
 184                   <dd>A site for potato and biotechnology
 185                   issues.</dd>
 186
 187                   <dt><br /><a href="http://gilb.cip.cgiar.org/" target="_new" >Global
 188                   Initiative for Late Blight (GILB)</a></dt>
 189
 190                   <dd>A collaboration for Late Blight
 191                   research.</dd>
 192
 193                   <dt><br /><a href=
 194                   "http://www.potgenebank.org/" target="_new" >Intergenebank for
 195                   Potato</a></dt>
 196
 197                   <dd>A database containing accession data from
 198                   different genebanks around the world, including
 199                   an SSR database.</dd>
 200
 201                   <!-- dt><br /><a href=
 202                   "http://www.potatogenome.org/nsf4/" target="_new" >PotatoGenome.org</a></dt  DEFUNCT?? -->
 203
 204                   <dt><br /><a href=
 205                   "http://www.europotato.org/" target="_new" >European Cultivated Potato Database</a></dt>
 206
 207
 208
 209                   <dd>The official website of the NSF potato genome
 210                   project.</dd>
 211                 </dl>
 212
 213                 <strong>Pepper Resources</strong>
 214
 215                 <dl>
 216                   <dt><a href=
 217                   "http://plant.pdrc.re.kr/ks200201/pepper.html" target="_new" >KRIBB
 218                   Pepper Resources</a></dt>
 219
 220                   <dd>A pepper EST database at KRIBB</dd>
 221
 222                   <dt><br /><a href=
 223                   "http://www.cnph.embrapa.br/capsicum/" target="_new" >Embrapa
 224                   Capsicum site</a></dt>
 225
 226                   <dd>A site dedicated to Pepper in Brazil</dd>
 227                 </dl>
 228
 229                 <strong>Petunia Resources</strong>
 230
 231                 <dl>
 232                   <dt><a href=
 233                   "http://www.petuniaplatform.net" target="_new" >Petuniaplatform.net</a></dt>
 234
 235                   <dd>A website dedicated to Petunia, with
 236                   contacts, techniques, bibliography and other
 237                   information.</dd>
 238                 </dl>
 239
 240                 <strong>Eggplant Resources</strong>
 241
 242                 <dl>
 243                   <dt><a href=
 244                   "http://www.bgard.science.ru.nl/WWW-IPGRI/eggplant.htm" target="_new" >Eggplant Database</a>
 245                    </dt>
 246 </dl>
 247                 <strong>Coffee Resources</strong>
 248
 249                 <dl>
 250                   <dt><a href="http://www.coffeedna.net/" target="_new" >CoffeeDNA
 251                   - A site for Coffee Genomics in Italy</a></dt>
 252
 253                   <dd>A site about coffee and coffee genomics.
 254                   Login required for certain functions.</dd>
 255                 </dl>
 256
 257                 <strong>Germplasm Resources</strong>
 258
 259                 <dl>
 260                   <dt><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
 261                   Genetic Resource Center (TGRC)</a></dt>
 262
 263                   <dd>Large collection of Solanaceae germplasms,
 264                   with a special focus on tomato.</dd>
 265
 266                   <dt><br /><a href="http://www.ars-grin.gov/npgs/" target="_new" >GRIN,
 267                   The National Germplasm System</a></dt>
 268
 269                   <dd>Large database of germplasm, integrating many
 270                   germplasm centers in the United States.</dd>
 271                 </dl>
 272
 273                 <strong>Euasterid Resources</strong>
 274
 275                 <dl>
 276                   <dt><a href="http://www.antirrhinum.net" target="_new" >Antirrhinum.net</a></dt>
 277                   <dd>The DragonDB database for Antirrhinum</dd>
 278                 </dl>
 279
 280                 <strong>Other Sequence Resources</strong>
 281
 282                 <dl>
 283                   <dt><a href="http://www.genome.arizona.edu/" target="_new" >The
 284                   Arizona Genome Initiative (AGI)</a></dt>
 285
 286                   <dd>The AGI is the place to <a href=
 287                   "http://www.genome.arizona.edu/orders/" target="_new" >order</a>
 288                   many of the ESTs and BAC clones for many
 289                   Solanaceae species such as potato. Please note
 290                   that BAC and EST <a href=
 291                   "http://ted.bti.cornell.edu/order/" target="_new" >orders</a>
 292                   for tomato are handled by the <a href=
 293                   "http://bti.cornell.edu/" target="_new" >Boyce Thompson
 294                   Institute</a>.</dd>
 295
 296                   <!-- LINK DEAD 11/2008 dt><br /><a href="http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=tomato">The
 297                   Institute for Genomic Research\'s (TIGR) Tomato
 298                   Gene Index</a></dt>
 299
 300                   <dd>The TIGR gene index for tomato.</dd -->
 301
 302                   <!--  LINK DEAD 11/2008 dt><br /><a href=
 303                   "http://grain.jouy.inra.fr/webace/webace?db=solgenes">
 304                   SolGenes</a></dt>
 305
 306                   <dd>The original SolGenes database. Still a
 307                   treasure of information.</dd -->
 308                 </dl>
 309               </td>
 310             </tr>
 311           </table>
 312
 313           <h4><a name="related" id="related"></a>Links to related
 314           websites</h4>
 315
 316           <ul>
 317             <li><a href="http://seedplants.org" target="_new" >Seedplants.org</a>, a site about seed plant descriptions and taxonomy.</li>
 318             <li><a href=
 319             "http://internt.nhm.ac.uk/jdsml/nature-online/seeds-of-trade/" target="_new" >Seeds of
 320             Trade</a> - a virtual book by Henry Hobhouse and Sandra
 321             Knapp about the history of plant cultivation.</li>
 322
 323             <li><a href="http://www.arabidopsis.org" target="_new" >TAIR</a> - The
 324             Arabidopsis Information Resource</li>
 325
 326             <li><a href="http://www.medicago.org" target="_new" >Medicago truncatula</a>
 327             - a model for legume research</li>
 328
 329             <li><a href="http://www.gramene.org" target="_new" >Gramene</a> - a
 330             comparative mapping resource for the grasses</li>
 331
 332             <li><a href="http://cggc.agtec.uga.edu" target="_new" >Comparative
 333             Grass Genomics Center</a> - a comparative resource for
 334             grasses, focusing on <em>Sorghum</em>.</li>
 335
 336             <li><a href=
 337             "http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp" target="_new" >OryzaBase</a>
 338             - Integrated Rice Science Database</li>
 339
 340             <li><a href="http://www.maizeGDB.org" target="_new" >MaizeGDB</a>
 341             - Maize Genetics and Genomics Database</li>
 342
 343             <li><a href="http://www.plantGDB.org" target="_new" >PlantGDB</a> -
 344             Plant Genome DataBase</li>
 345
 346             <li><a href="http://www.ncbi.nlm.nih.gov/" target="_new" >NCBI</a> -
 347             National Center for Biotechnology Information</li>
 348
 349             <li><a href="http://www.biocyc.org" target="_new" >BioCyc</a>,
 350             <a href="http://www.metacyc.org" target="_new" >MetaCyc</a> and
 351             <a href=
 352             "http://www.arabidopsis.org/biocyc/index.jsp" target="_new" >AraCyc</a> -
 353             Collections of curated biochemical pathways.</li>
 354
 355             <li><a href="http://www.genome.ad.jp/kegg/" target="_new" >KEGG</a> -
 356             Kyoto Encyclopedia of Genes and Genomes.</li>
 357
 358             <li><a href="http://www.biomoby.org" target="_new" >The BioMoby
 359             Project</a> - the database interoperability
 360             project</li>
 361
 362             <li><a href="http://www.genomics.cornell.edu" target="_new" >Cornell
 363             Genomics Initiative</a></li>
 364
 365             <li><a href="http://biocurator.org" target="_new" >Biocurator.org</a> - the official site for biocuration.</li>
 366           </ul><br />
 367           <br />
 368           <br />
 369           <br />
 370           <br />
 371         </td>
 372       </tr>
 373     </table>
 374
 375   </center>