db/00056/AddMdImageCvtermTable.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddMdImageCvtermTable.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run ThisPackageName [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  18
  19 =head1 AUTHOR
  20
  21  Naama Menda<nm249@cornell.edu>
  22
  23 =head1 COPYRIGHT & LICENSE
  24
  25 Copyright 2010 Boyce Thompson Institute for Plant Research
  26
  27 This program is free software; you can redistribute it and/or modify
  28 it under the same terms as Perl itself.
  29
  30 =cut
  31
  32
  33 package AddMdImageCvtermTable;
  34
  35 use Moose;
  36 extends 'CXGN::Metadata::Dbpatch';
  37
  38
  39 has '+description' => ( default => <<'' );
  40 Adds a linking table between the metadata.md_image and cvterm table
  41
  42 has '+prereq' => (
  43     default => sub {
  44         [ ],
  45     },
  46   );
  47
  48 sub patch {
  49     my $self=shift;
  50
  51     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  52
  53     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  54
  55     print STDOUT "\nExecuting the SQL commands.\n";
  56
  57     $self->dbh->do(<<EOSQL);
  58 --do your SQL here
  59 --
  60
  61 CREATE TABLE metadata.md_image_cvterm (
  62     md_image_cvterm_id serial primary key,
  63     image_id bigint REFERENCES metadata.md_image(image_id) NOT NULL,
  64     cvterm_id bigint REFERENCES cvterm(cvterm_id) NOT NULL,
  65     sp_person_id bigint REFERENCES sgn_people.sp_person(sp_person_id),
  66     obsolete boolean DEFAULT false
  67 );
  68
  69
  70     GRANT select,insert ON metadata.md_image_cvterm TO web_usr;
  71     GRANT USAGE ON metadata.md_image_cvterm_md_image_cvterm_id_seq to web_usr;
  72
  73 EOSQL
  74
  75 print "You're done!\n";
  76 }
  77
  78
  79 ####
  80 1; #
  81 ####