cgi-bin/maps/lpimp_ibl/index.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new("index.html","html2pl converter");
   4 $page->header("Lycopersicon Pimpinellifolium Inbred Backcross
   5   Lines.");
   6 print<<END_HEREDOC;
   7
   8   <center>
   9
  10
  11     <table summary="" width="720" cellpadding="0" cellspacing="0"
  12     border="0">
  13       <tr>
  14         <td>
  15           <center>
  16             <h2>Lycopersicon pimpinellifolium Inbred Backcross
  17             Lines (IBLs)</h2>
  18           </center>
  19
  20           <p>A set of 196 inbred-backcross lines (IBLs) (BC2F6) was
  21           generated from a population which had been developed as
  22           part of an AB-QTL strategy to identify useful alleles
  23           from a small red fruited wild relative of tomato,
  24           Lycopersicon pimpinellifolium LA1589 (Grandillo and
  25           Tanksley, 1996; Tanksley et al. 1996). The population has
  26           been mapped with 127 markers covering the tomato genome
  27           (Doganlar et al 2002). Each of the IBL contains more than
  28           one introgressed region from L. pimpinellifolium in the
  29           L. esculentum cv. E6203 background. The IBLs are a
  30           permanent mapping resource that can be used by tomato
  31           geneticists and breeders for mapping, gene discovery and
  32           breeding.</p>
  33
  34           <p>A consensus map was constructed from the three studies
  35           that used populations derived from the original L.
  36           esculentum cv. E6203 x L. pimpinellifolium LA1589 cross
  37           Grandillo and Tanksley, 1996; Tanksley et al. 1996,
  38           Doganlar et al. 2002). The map contains 151 markers
  39           covering the entire tomato genome, cM values are based on
  40           the map of Tanksley et al. (1996).</p>
  41
  42           <p>To improve the utility of the IBL population, a subset
  43           of 100 lines giving the most uniform genome coverage and
  44           map resolution was selected using a randomized greedy
  45           algorithm as implemented in the software package MapPop
  46           (Vision et al. 2001). The seed for the selected subset of
  47           100 IBLs will be available through the <a href=
  48           "http://tgrc.ucdavis.edu">Tomato Genetics
  49           Resource Center</a>,
  50           TGRC, Davis, CA).</p>
  51
  52           <h2>Map of Lycopersicon Pimpinellifolium LA1589</h2>
  53
  54           <p>The following links display the individual chromosomes
  55           of this map.<br />
  56           Click on the names of individual markers to connect to
  57           that marker's entry in the SGN database.</p>
  58
  59           <ul>
  60             <li><a href="chromosome1.pl">Chromosome1</a></li>
  61
  62             <li><a href="chromosome2.pl">Chromosome2</a></li>
  63
  64             <li><a href="chromosome3.pl">Chromosome3</a></li>
  65
  66             <li><a href="chromosome4.pl">Chromosome4</a></li>
  67
  68             <li><a href="chromosome5.pl">Chromosome5</a></li>
  69
  70             <li><a href="chromosome6.pl">Chromosome6</a></li>
  71
  72             <li><a href="chromosome7.pl">Chromosome7</a></li>
  73
  74             <li><a href="chromosome8.pl">Chromosome8</a></li>
  75
  76             <li><a href="chromosome9.pl">Chromosome9</a></li>
  77
  78             <li><a href="chromosome10.pl">Chromosome10</a></li>
  79
  80             <li><a href="chromosome11.pl">Chromosome11</a></li>
  81
  82             <li><a href="chromosome12.pl">Chromosome12</a></li>
  83           </ul>
  84
  85           <h3>IBL References</h3>
  86
  87           <p>Doganlar S, Frary A, Ku HM and Tanksley SD (submitted)
  88           <em>Mapping Quantitative Trait Loci in Inbred Backcross
  89           Lines of Lycopersicon pimpinellifolium (LA1589).</em></p>
  90
  91           <p>Tanksley SD, Grandillo S, Fulton TM, Zamir D, Eshed Y,
  92           Petiard V, Lopez J and Beck-Bunn T (1996) <em>Advanced
  93           backcross QTL analysis in a cross between an elite
  94           processing line of tomato and its wild relative L.
  95           pimpinellifolium.</em> Theor Appl Genet 92: 213-224.</p>
  96
  97           <p>Grandillo S and Tanksley SD (1996) <em>QTL analysis of
  98           horticultural traits differentiating the cultivated
  99           tomato from the closely related species Lycopersicon
 100           pimpinellifolium.</em> Theor Appl Genet 92: 935-951.</p>
 101
 102           <p>Vision TJ, Brown DG, Shmoys DB, Durret, R.T and
 103           Tanksley SD (2000) <em>Selective mapping: A strategy for
 104           optimizing the costruction of high-density linkage
 105           maps.</em> Genetics 155: 407-420.</p>
 106         </td>
 107       </tr>
 108     </table>
 109
 110   </center>
 111 END_HEREDOC
 112 $page->footer();