mason/page/detail_page_2_col_section.mas

   1 <%args>
   2 $trial_id => undef
   3 $trial_name => undef
   4 $stock_id => undef
   5 $stock_uniquename => undef
   6 $col1_width_class => "col-sm-1"
   7 $col2_width_class => "col-sm-11"
   8 $icon_class => "glyphicon glyphicon-th"
   9 $info_section_collapsible => 1
  10 $info_section_collapsed => 1
  11 $info_section_id => "2col_id"
  12 $info_section_title => "A title"
  13 $info_section_subtitle => "A subtitle"
  14 $buttons_html => undef
  15 $locations_by_program_json => undef
  16
  17 #Trying to find the right one
  18 $project_id => undef
  19 $name => undef
  20
  21
  22 #Specific to trial detail page
  23 $has_plant_entries => undef
  24 $has_subplot_entries => undef
  25 $has_tissue_sample_entries => undef
  26 $has_expression_atlas => undef
  27 $expression_atlas_url => undef
  28 $site_project_name => undef
  29 $sgn_session_id => undef
  30 $user_name => undef
  31 $main_production_site_url => undef
  32 $trial_phenotype_files => undef
  33 $hidap_enabled => undef
  34 $location_name => undef
  35 $country_name => undef
  36 $breeding_program_name => undef
  37 $breeding_program_id => undef
  38 $year => undef
  39 $trial_type => undef
  40 $design_name => undef
  41 $planting_date => undef
  42 $transplanting_date => undef
  43 $harvest_date => undef
  44 $trial_description => undef
  45 $folder_name => undef
  46 $folder_id => undef
  47 $plot_width => undef
  48 $plot_length => undef
  49 $field_size => undef
  50 $field_trial_is_planned_to_be_genotyped => undef
  51 $field_trial_is_planned_to_cross => undef
  52 $identifier_prefix => undef
  53 $genotyping_facility => undef
  54 $management_factor_date => undef
  55 $management_factor_type => undef
  56 $trial_stock_type => undef
  57 $trial_stock_count => undef
  58 $trial_owner => undef
  59 $phenotypes_fully_uploaded => undef
  60 $user_can_modify => undef
  61 $latest_trial_activity => undef
  62 $has_col_and_row_numbers => undef
  63
  64 #Specific to stock detail page
  65 $type_name => undef
  66 $stockref => {}
  67 $stockprops => undef
  68 $edit_privs => undef
  69 $editable_stock_props => undef
  70 $editor_link => undef
  71 $source_dbs => {}
  72 $locus_add_uri => undef
  73 $new_locus_link => undef
  74 $allele_div => undef
  75 $is_owner => undef
  76 $map_html => undef
  77 $has_pedigree => undef
  78 $image_ids => undef
  79 $related_image_ids => undef
  80 $dbh => undef
  81 $trait_ontology_db_name => undef
  82 $pubs => undef
  83 $cvterm_add_uri => undef
  84 $referer => undef
  85
  86 #Specific to genotyping protocol detail page
  87 $protocol_id => undef
  88 $protocol_name => undef
  89 $protocol_description => undef
  90 $marker_names => []
  91 $header_information_lines => []
  92 $reference_genome_name => undef
  93 $species_name => undef
  94 $create_date => undef
  95 $sample_observation_unit_type_name => undef
  96 $marker_type => undef
  97 $genotype_data_type => undef
  98 $marker_info_headers => undef
  99 $assay_type => undef
 100
 101 #Specific to drone run detail page
 102 $drone_run_date => undef
 103 $id_extension => undef
 104
 105 #Specific to analysis detail page
 106 $analysis_metadata => undef
 107 $for_analysis_page => undef
 108 $data_level => undef
 109
 110 $program_id => undef
 111 $program_name => undef
 112
 113 #Specific to analysis model detail page
 114 $model_id => undef
 115 $model_name => undef
 116 $model_description => undef
 117 $model_properties => {}
 118 $model_file_ids => {}
 119 $model_type_name => undef
 120 $model_files => {}
 121
 122 #Specific to manage nirs page
 123 $nirs_files => undef
 124 $deleted_nirs_files => undef
 125 $all_nirs_files => undef
 126 $all_deleted_nirs_files => undef
 127 $locations => undef
 128 $sampling_facilities => ()
 129
 130 #Specific to analytics detail page
 131 $analytics_protocol_id => undef
 132 $analytics_protocol_name => undef
 133 $analytics_protocol_description => undef
 134 $analytics_protocol_type_id => undef
 135 $analytics_protocol_type_name => undef
 136 $analytics_protocol_create_date => undef
 137 $analytics_protocol_properties => {}
 138 $analytics_protocol_result_summary => {}
 139
 140 #specific to transformation project page
 141 $tracking_project_id => undef
 142 $autogenerated_name_prefixes => ()
 143
 144 #Specific to activity page
 145 $vendor_id => undef
 146 $parent_project_id => undef
 147 $activity_type => undef
 148 $field_headers => ()
 149
 150 </%args>
 151
 152 <& /util/import_javascript.mas,
 153    classes => ["jquery", "jqueryui", "thickbox", "CXGN.Page.FormattingHelpers", "jquery.cookie", "CXGN.Stock", "d3.d3v4Min" ],
 154   entries => ["sequenced_accessions"]
 155 &>
 156
 157 <div class="row">
 158     <div class="col-sm-12">
 159         <div class="well">
 160             <div class="row">
 161                 <div class="<% $col1_width_class %>">
 162                     <span style="font-size:3.5em;" class="<% $icon_class %>"></span>
 163                 </div>
 164                 <div class="<% $col2_width_class %>">
 165
 166                     <&| /page/info_section.mas, id => $info_section_id, title => $info_section_title, collapsible=>$info_section_collapsible, collapsed => $info_section_collapsed, subtitle=> $info_section_subtitle &>
 167
 168 % if ($buttons_html){
 169                         <div class="panel panel-default">
 170                             <div class="panel-body">
 171                                 <% $buttons_html %>
 172                             </div>
 173                         </div>
 174 % }
 175
 176                         <div class="panel panel-default">
 177                             <div class="panel-body">
 178
 179 % if ($info_section_id eq 'pheno_heatmap'){
 180                                 <& /breeders_toolbox/trial/phenotype_heatmap.mas, trial_id => $trial_id, data_level => $data_level, has_col_and_row_numbers => $has_col_and_row_numbers &>
 181 % } #End pheno_heatmap
 182 % if ($info_section_id eq 'trial_design_section'){
 183                                 <& /breeders_toolbox/trial/design_section.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name, trial_stock_type => $trial_stock_type &>
 184 % } #End trial_design_section
 185 % if ($info_section_id eq 'trial_detail_traits_assayed'){
 186
 187 % if ($has_expression_atlas) {
 188                                 <& /breeders_toolbox/trial/export_trial_to_expression_atlas.mas, trial_id => $trial_id, trial_name=>$trial_name, expression_atlas_url=>$expression_atlas_url, site_project_name=>$site_project_name, sgn_session_id=>$sgn_session_id, user_name=>$user_name, main_production_site_url=>$main_production_site_url &>
 189 % }
 190
 191                                 <& /breeders_toolbox/trial/phenotype_summary.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 192
 193 % } #End trial_detail_traits_assayed
 194
 195 % if ($info_section_id eq 'trial_raw_data') {
 196    <& /breeders_toolbox/trial/trial_raw_data.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 197 % }
 198
 199
 200 % if ($info_section_id eq 'compute_derived_traits'){
 201                                 <& /breeders_toolbox/trial/derived_trait.mas, trial_id => $trial_id &>
 202 % } #End compute_derived_traits
 203 % if ($info_section_id eq 'trial_upload_files'){
 204                                 <& /breeders_toolbox/trial/files_section.mas, trial_id => $trial_id, trial_phenotype_files => $trial_phenotype_files, trial_stock_type => $trial_stock_type, for_analysis_page => $for_analysis_page &>
 205 % } #End trial_upload_files
 206 % if ($info_section_id eq 'trial_analysis_tools'){
 207
 208
 209                                 <!-- analysis tools on saved measurements -->
 210                                <& /breeders_toolbox/trial/saved_measurement_analysis.mas,
 211                                      trial_id => $trial_id
 212                                 &>
 213                                 <!-- Phenotypic correlation analysis -->
 214                                 <& /solgs/tools/correlation/analysis.mas,
 215                                     corr_pop_id => $trial_id
 216                                 &>
 217
 218                                 <& /solgs/tools/anova/analysis.mas,
 219                                     trial_id => $trial_id
 220                                 &>
 221
 222                                  <!-- Population structure analysis PCA -->
 223                                 <& /solgs/tools/pca/analysis.mas,
 224                                     trial_id => $trial_id
 225                                   &>
 226
 227                                 <!-- Clustering -->
 228                                 <& /solgs/tools/cluster/analysis.mas,
 229                                     trial_id => $trial_id
 230                                   &>
 231
 232                                 <!-- kinship and inbreeding-->
 233                                 <& /solgs/tools/kinship/analysis.mas,
 234                                     trial_id => $trial_id
 235                                 &>
 236
 237
 238                                   <& /tools/heritability/heritability.mas,
 239                                     trial_id => $trial_id
 240                                 &>
 241
 242                                 <& /solgs/population/trait_acronyms.mas,
 243                                   trial_id => $trial_id
 244                               &>
 245
 246 % if ($c->req->base =~ /sweetpotatobase/) {
 247                                 <& /tools/qualityControl/qualityControl.mas,
 248                                     trial_id => $trial_id
 249                                 &>
 250 % }
 251
 252 % if ($hidap_enabled) {
 253                                 <& /hidap/hidap_trial_link.mas, main_production_site_url=>$main_production_site_url, program => $breeding_program_name, folder => $folder_name, trial => $trial_name &>
 254 % }
 255 % } #End trial_analysis_tools
 256 % if ($info_section_id eq 'trial_weather_data'){
 257                                 <& /breeders_toolbox/trial/weather.mas, location => $location_name &>
 258 % } #End trial_weather_data
 259 % if ($info_section_id eq 'trial_jbrowse_data'){
 260                                 <& /breeders_toolbox/trial/jbrowse_instance.mas, trial_id => $trial_id &>
 261 %} #End trial_jbrowse_data
 262 % if ($info_section_id eq 'trial_linkage_section'){
 263                                 <&| /page/info_section.mas, title => 'Field Trial to Field Trial Linkage', id => 'field_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 264                                     <& /breeders_toolbox/trial/field_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => $trial_type, trial_name=>$trial_name &>
 265                                 </&>
 266                                 <&| /page/info_section.mas, title => 'Field Trial to Genotyping Plate Linkage', id => 'genotyping_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 267                                     <& /breeders_toolbox/trial/genotyping_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 268                                 </&>
 269                                 <&| /page/info_section.mas, title => 'Field Trial to Crossing Experiment Linkage', id => 'crossing_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 270                                     <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 271                                 </&>
 272 %} #End trial_linkage_section
 273 % if ($info_section_id eq 'trial_deletion_section'){
 274                                 <&| /page/info_section.mas, title=>'Delete trial data', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 275                                     <& /breeders_toolbox/trial/trial_deletion.mas, trial_id => $trial_id  &>
 276                                 </&>
 277 %} #End trial_deletion_section
 278 % if ($info_section_id eq 'trial_data_agreement_section'){
 279                                 <& /breeders_toolbox/data_agreement.mas, trial_id => $trial_id &>
 280 % } #End trial_data_agreement_section
 281 % if ($info_section_id eq 'trial_status_section'){
 282                                 <& /breeders_toolbox/trial/trial_status.mas, trial_id => $trial_id, trial_name => $trial_name, breeding_program_name => $breeding_program_name, location_name => $location_name, year => $year, trial_type => $trial_type, planting_date => $planting_date, transplanting_date => $transplanting_date, harvest_date => $harvest_date, trial_description => $trial_description, folder_id => $folder_id, design_name => $design_name, has_plant_entries => $has_plant_entries, phenotypes_fully_uploaded => $phenotypes_fully_uploaded, user_can_modify => $user_can_modify, user_name => $user_name &>
 283 % } #End trial_status_section
 284 % if ($info_section_id eq 'trial_soil_data_section'){
 285                                 <& /breeders_toolbox/trial/trial_soil_data.mas, trial_id => $trial_id &>
 286 % } #End trial_soil_data_section
 287
 288
 289 % if ($info_section_id eq 'stock_additional_info_section'){
 290                                 <& /stock/additional_info_section.mas, stock_id => $stock_id, type_name => $type_name, stockprops => $stockprops, edit_privs => $edit_privs, editable_stock_props => $editable_stock_props, editor_link => $editor_link, source_dbs => $source_dbs, locus_add_uri => $locus_add_uri, allele_div => $allele_div, is_owner => $is_owner &>
 291 % } #End stock_additional_info_section
 292 % if ($info_section_id eq 'stock_trials_section'){
 293                                 <& /stock/trials.mas, stock_id => $stock_id, trial_id => $trial_id, trial_name => $trial_name, name => $name, project_id => $project_id&>
 294 % } #End stock_trials_section
 295 % if ($info_section_id eq 'stock_upload_files'){
 296                                 <& /stock/accession_files.mas, stock_id => $stock_id &>
 297 % } #End stock_upload_files
 298 % if ($info_section_id eq 'stock_traits_section'){
 299                                 <& /stock/traits.mas, stock_id => $stock_id &>
 300 % } #End stock_traits_section
 301 % if ($info_section_id eq 'stock_genotypes_section'){
 302                                 <& /stock/direct_genotypes.mas, stock_id => $stock_id, map_html => $map_html &>
 303 % } #End stock_genotypes_section
 304 % if ($info_section_id eq 'stock_pedigree_section'){
 305                                 <&| /page/info_section.mas, title=>"Pedigree and Descendants" , collapsible=> 0, collapsed=>0 &>
 306                                     <& /pedigree/stock_pedigree.mas, stock_id => $stock_id, has_pedigree => $has_pedigree &>
 307                                 </&>
 308
 309                                 <& /pedigree/stock_pedigree_string.mas, stock_id => $stock_id &>
 310 % } #End stock_pedigree_section
 311 % if ($info_section_id eq 'stock_related_stock_section'){
 312                                 <& /stock/related_stock.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename, stock_type => $type_name &>
 313 % } #End stock_related_stock_section
 314 % if ($info_section_id eq 'vector_related_stocks_section'){
 315                                 <& /stock/vector_related_stocks.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename, stock_type => $type_name &>
 316 % } #End vector_related_stocks_section
 317
 318 % if ($info_section_id eq 'stock_images_section'){
 319                                 <& /image/compare_images.mas, stock_id => $stock_id &>
 320
 321                                 <&| /page/info_section.mas, title=>"Images of This Stock(" .  scalar(@$image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 322                                     <& /image/print_images.mas , images=>$image_ids , dbh=>$dbh, additional_image_button_id=>'stock_images' &>
 323                                 </&>
 324
 325                                 <&| /page/info_section.mas, title=>"Images of Related Stock(s) (" .  scalar(@$related_image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 326                                     <& /image/print_images.mas , images=>$related_image_ids , dbh=>$dbh, additional_image_button_id=>'related_stock_images' &>
 327                                 </&>
 328 % } #End stock_images_section
 329 % if ($info_section_id eq 'stock_sequencing_status_section'){
 330                                 <& /stock/sequencing_status.mas, stock_id => $stock_id &>
 331 % } #End stock audit section
 332 % if($info_section_id eq 'audit_table_section'){
 333         <& /stock/audit.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename&>
 334 % } #End TRIALS audit section
 335 % if($info_section_id eq 'trial_audit_table_section'){
 336         <& /breeders_toolbox/trial/trial_audit.mas, trial_id => $trial_id, project_id => $project_id&>
 337 % } #End stock requencing status section
 338 % if ($info_section_id eq 'stock_literature_annotation_section'){
 339                                 <&| /page/info_section.mas, title=>"Literature annotation (".scalar( @$pubs ).")" , id=>"publications" , collapsible=>1, collapsed=>1 &>
 340
 341
 342 % foreach my $publication ( @$pubs  ) {
 343   <& /chado/publication.mas, pub=>$publication &>
 344     <br >
 345 % }
 346
 347                                 </&>
 348
 349                                 <&| /page/info_section.mas, id   => 'stock_ontology', title=>"Ontology annotation (" . $stockref->{ontology_count} . ")" &>
 350                                     <& /ontology/associate_ontology.mas,
 351                                     trait_db_name => $trait_ontology_db_name,
 352                                     object_id     => $stock_id ,
 353                                     object_name   => "stock",
 354                                     cvterm_add_uri=> $cvterm_add_uri,
 355                                     ontology_url  => "/stock/$stock_id/ontologies/",
 356                                     reference_uri => "/stock/$stock_id/references/",
 357                                     evidence_with_uri => "/stock/$stock_id/evidences/",
 358                                     show_form     => $is_owner  &>
 359                                 </&>
 360 % } #End stock_literature_annotation_section
 361 % if ($info_section_id eq 'stock_jbrowse_section'){
 362                                 <p id="jbrowse_check">[loading...]</p>
 363 % } #End stock_jbrowse_section
 364 % if ($info_section_id eq 'stock_comments_section'){
 365                                 <& /page/comments.mas, object_type=>'stock', object_id=>$stock_id, referer=>$referer &>
 366 % } #End stock_comments_section
 367 % if ($info_section_id eq 'stock_delete_section'){
 368                                 <& /stock/delete.mas, stock_id=>$stock_id &>
 369 % } #End stock_delete_section
 370 % if ($info_section_id eq 'population_delete_section'){
 371                                 <& /stock/population_delete.mas, stock_id=>$stock_id, stock_uniquename=>$stock_uniquename &>
 372 % } #End population_delete_section
 373 % if ($info_section_id eq 'population_members_section'){
 374                                 <& /stock/population_members.mas, stock_id=>$stock_id &>
 375 % } #End population_members_section
 376 % if ($info_section_id eq 'manage_tissue_samples_field_trials'){
 377                                 <& /breeders_toolbox/tissue_samples/field_trials_with_tissue_samples.mas &>
 378 % } #End manage_tissue_samples_field_trials
 379 % if ($info_section_id eq 'manage_tissue_samples_genotyping_trials'){
 380                                 <& /breeders_toolbox/tissue_samples/genotyping_trials.mas &>
 381 % } #End manage_tissue_samples_genotyping_trials
 382 % if ($info_section_id eq 'manage_tissue_samples_sampling_trials'){
 383                                 <& /breeders_toolbox/tissue_samples/sampling_trials.mas &>
 384 % } #End manage_tissue_samples_sampling_trials
 385 % if ($info_section_id eq 'trial_details'){
 386                                 <& /breeders_toolbox/trial/trial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_type=>$trial_type, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, plot_width=>$plot_width, plot_length=>$plot_length, field_size=>$field_size, field_trial_is_planned_to_be_genotyped=>$field_trial_is_planned_to_be_genotyped, field_trial_is_planned_to_cross=>$field_trial_is_planned_to_cross, trial_stock_type => $trial_stock_type, trial_stock_count => $trial_stock_count, trial_owner => $trial_owner, latest_trial_activity => $latest_trial_activity &>
 387 % } #End trial_details
 388 % if ($info_section_id eq 'stocks_search_graphical_filtering'){
 389                                 <& /search/stocks_graphicalfiltering.mas &>
 390 % } #End stocks_search_graphical_filtering
 391
 392
 393 % if ($info_section_id eq 'genotyping_data_project_details'){
 394                                 <& /breeders_toolbox/genotyping_data_project/details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, year=>$year, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, genotyping_facility => $genotyping_facility, genotype_data_type => $genotype_data_type, trial_owner => $trial_owner &>
 395 % } #End genotyping_data_project_details
 396 % if ($info_section_id eq 'genotyping_data_project_protocols'){
 397                                 <& /breeders_toolbox/genotyping_data_project/protocols.mas, trial_id=>$trial_id &>
 398 % } #End genotyping_data_project_protocols
 399 % if ($info_section_id eq 'genotyping_data_project_data'){
 400                                 <& /breeders_toolbox/genotyping_data_project/genotype_data.mas, trial_id=>$trial_id &>
 401 % } #End genotyping_data_project_data
 402 % if ($info_section_id eq 'genotyping_project_plates'){
 403                                 <& /breeders_toolbox/genotyping_data_project/genotyping_plates.mas, trial_id=>$trial_id &>
 404 % } #End genotyping_project_plates
 405 % if ($info_section_id eq 'genotyping_data_archived_vcf') {
 406                                 <& /breeders_toolbox/genotyping_data_project/genotype_archived_vcf.mas, trial_id=>$trial_id &>
 407 % } #End genotyping_data_archived_vcf
 408 % if ($info_section_id eq 'genotyping_project_deletion_section'){
 409                                 <& /breeders_toolbox/genotyping_data_project/genotyping_project_deletion.mas, trial_id=>$trial_id &>
 410 % } #End genotyping_project_deletion_section
 411 % if ($info_section_id eq 'project_pcr_genotype_data'){
 412                                 <& /breeders_toolbox/genotyping_data_project/pcr_genotype_data.mas, trial_id => $trial_id, marker_names => $marker_names &>
 413 % } #End project_pcr_genotype_data
 414
 415
 416 % if ($info_section_id eq 'identifier_generation_list'){
 417                                 <& /breeders_toolbox/identifier_generation/list_identifier_generation.mas &>
 418 % } #End identifier_generation_list
 419 % if ($info_section_id eq 'management_factor_details'){
 420                                 <& /breeders_toolbox/trial/management_factor_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, year=>$year, management_factor_type=>$management_factor_type, management_factor_date=>$management_factor_date &>
 421 % } #End management_factor_details
 422 % if ($info_section_id eq 'management_factor_design'){
 423                                 <& /breeders_toolbox/trial/design_section_management_factor.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name &>
 424 % } #End management_factor_design
 425
 426 % if ($info_section_id eq 'genotyping_protocol_details'){
 427                                 <& /breeders_toolbox/genotyping_protocol/details.mas, protocol_id => $protocol_id, protocol_name => $protocol_name, protocol_description => $protocol_description, marker_names => $marker_names, header_information_lines => $header_information_lines, reference_genome_name => $reference_genome_name, species_name => $species_name, create_date => $create_date, sample_observation_unit_type_name => $sample_observation_unit_type_name, marker_type => $marker_type, assay_type => $assay_type &>
 428 % } #End genotyping_protocol_details
 429 % if ($info_section_id eq 'genotyping_protocol_markers'){
 430                                 <& /breeders_toolbox/genotyping_protocol/markers.mas, protocol_id => $protocol_id, marker_info_headers => $marker_info_headers &>
 431 % } #End genotyping_protocol_markers
 432 % if ($info_section_id eq 'genotyping_protocol_genotype_data'){
 433                                 <& /breeders_toolbox/genotyping_protocol/genotype_data.mas, protocol_id => $protocol_id &>
 434 % } #End genotyping_protocol_genotype_data
 435 % if ($info_section_id eq 'genotyping_protocol_delete_genotype_data') {
 436                                 <& /breeders_toolbox/genotyping_protocol/delete_genotype_data.mas, protocol_id => $protocol_id &>
 437 % }
 438 % if ($info_section_id eq 'pcr_based_genotyping_markers'){
 439                                 <& /breeders_toolbox/genotyping_protocol/pcr_markers.mas, protocol_id => $protocol_id &>
 440 % } #End pcr_based_genotyping_markers
 441 % if ($info_section_id eq 'pcr_genotyping_protocol_genotype_data'){
 442                                 <& /breeders_toolbox/genotyping_protocol/pcr_genotype_data.mas, protocol_id => $protocol_id, marker_names => $marker_names &>
 443 % } #End pcr_genotyping_protocol_genotype_data
 444
 445
 446
 447 % if ($info_section_id eq 'crossingtrial_details'){
 448                                 <& /breeders_toolbox/cross/crossingtrial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner &>
 449 % } #End crossingtrial_details
 450
 451 % if ($info_section_id eq 'target_numbers_crossingtrial_section'){
 452                                 <& /breeders_toolbox/cross/target_numbers.mas, trial_id=>$trial_id &>
 453 % } #End target_numbers_crossingtrial_section
 454
 455 % if ($info_section_id eq 'crosses_in_crossingtrial_section'){
 456                                 <& /breeders_toolbox/cross/crosses_in_crossingtrial.mas, trial_id=>$trial_id &>
 457 % } #End crosses_in_crossingtrial_section
 458
 459 % if ($info_section_id eq 'additional_info_crossingtrial_section'){
 460                                 <& /breeders_toolbox/cross/cross_additional_info_crossingtrial.mas, trial_id=>$trial_id &>
 461 % } #End additional_info_crossingtrial_section
 462
 463 % if ($info_section_id eq 'cross_properties_crossingtrial_section'){
 464                                 <& /breeders_toolbox/cross/cross_properties_crossingtrial.mas, trial_id=>$trial_id &>
 465 % } #End cross_properties_crossingtrial_section
 466
 467 % if ($info_section_id eq 'progenies_in_crossingtrial_section'){
 468                                 <& /breeders_toolbox/cross/progenies_in_crossingtrial.mas, trial_id=>$trial_id &>
 469 % } #End progenies_in_crossingtrial_section
 470
 471 % if ($info_section_id eq 'seedlots_from_crossingtrial_section'){
 472                                 <& /breeders_toolbox/cross/seedlots_from_crossingtrial.mas, trial_id=>$trial_id, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, locations_by_program_json=>$locations_by_program_json &>
 473 % } #End seedlots_from_crossingtrial_section
 474
 475 % if ($info_section_id eq 'crossing_trial_from_field_trial_section'){
 476                                 <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'crossing_trial' &>
 477 % } #End crossing_trial_from_field_trial_section
 478
 479 % if ($info_section_id eq 'marker_set_summary_section'){
 480                                 <& /breeders_toolbox/markers/marker_set_summary.mas &>
 481 % } #End marker_set_summary_section
 482
 483 % if ($info_section_id eq 'crossing_experiment_deletion_section'){
 484                                 <& /breeders_toolbox/cross/crossing_experiment_deletion.mas, trial_id => $trial_id  &>
 485 %} #End crossing_experiment_deletion_section
 486
 487 % if ($info_section_id eq 'intercross_section'){
 488                                 <& /breeders_toolbox/cross/intercross_file_info.mas, trial_id => $trial_id  &>
 489 %} #End intercross_section
 490
 491 % if ($info_section_id eq 'progeny_search_section'){
 492                                 <& /search/cross/progeny_search_section.mas &>
 493 %} #End progeny_search_section
 494
 495 % if ($info_section_id eq 'cross_search_section'){
 496                                 <& /search/cross/cross_search_section.mas &>
 497 %} #End cross_search_section
 498
 499 % if ($info_section_id eq 'parent_search_section'){
 500                                 <& /search/cross/parent_search.mas &>
 501 %} #End parent_search_section
 502
 503 % if ($info_section_id eq 'all_cross_entries_section'){
 504                                 <& /breeders_toolbox/cross/all_cross_entries.mas &>
 505 %} #End all_cross_entries_section
 506
 507 % if ($info_section_id eq 'manage_nirs_main'){
 508                                 <& /tools/nirs/manage_nirs_main.mas, nirs_files => $nirs_files, deleted_nirs_files => $deleted_nirs_files, all_nirs_files => $all_nirs_files, all_deleted_nirs_files => $all_deleted_nirs_files, locations => $locations, sampling_facilities=>$sampling_facilities &>
 509 % } #End manage_nirs_main
 510
 511 % if ($info_section_id eq 'manage_sequence_metadata'){
 512     <& /tools/sequence_metadata/manage_sequence_metadata_main.mas &>
 513 % } #End manage_smd_main
 514
 515 % if ($info_section_id eq 'manage_drone_imagery_main'){
 516                                 <& /breeders_toolbox/drone_imagery/raw_image_section.mas &>
 517 % } #End manage_drone_imagery_main
 518
 519 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_section'){
 520                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_section.mas, id_extension=>$id_extension &>
 521 % } #End manage_drone_imagery_generate_plot_polygons_section
 522 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section'){
 523                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section.mas, id_extension=>$id_extension &>
 524 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section
 525 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points'){
 526                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section_ground_control_points.mas &>
 527 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points
 528 % if ($info_section_id eq 'manage_drone_imagery_standard_process_generate_plot_polygons_section'){
 529                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_section.mas &>
 530 % } #End manage_drone_imagery_standard_process_generate_plot_polygons_section
 531 % if ($info_section_id eq 'drone_run_project_details'){
 532                                 <& /breeders_toolbox/drone_imagery/drone_run_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, drone_run_date=>$drone_run_date &>
 533 % } #End trial_details
 534 % if ($info_section_id eq 'analysis_details'){
 535                                 <& /analyses/analysis_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, year=>$year, identifier_prefix=>$identifier_prefix, trial_stock_type => $trial_stock_type, analysis_metadata=>$analysis_metadata &>
 536 % } #End analysis_details
 537 % if ($info_section_id eq 'analysis_page_analysis_tools'){
 538                                 <& /breeders_toolbox/trial/correlation_workflow.mas, trial_id => $trial_id, is_analysis => 1 &>
 539
 540                                 <& /breeders_toolbox/trial/time_series_accessions_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 541
 542                                 <& /breeders_toolbox/trial/accession_rank_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 543
 544                                 <& /breeders_toolbox/trial/genotype_comparison_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 545 % }
 546 % if ($info_section_id eq 'model_details'){
 547                                 <& /analyses/model_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, analysis_metadata=>$analysis_metadata &>
 548 % } #End analysis_details
 549 % if ($info_section_id eq 'analysis_model_details'){
 550                                 <& /analyses/model_detail_page_section.mas, model_id => $model_id, model_name => $model_name, model_description => $model_description, model_properties => $model_properties, model_file_ids => $model_file_ids, model_type_name => $model_type_name, model_files => $model_files, identifier_prefix => $identifier_prefix &>
 551 % } #End analysis_model_details
 552 % if ($info_section_id eq 'model_analyses'){
 553                                 <& /analyses/model_detail_page_analyses_section.mas, model_id => $model_id &>
 554 % } #End model_analyses
 555 % if ($info_section_id eq 'analytics_protocol_details'){
 556                                 <& /analytics_protocols/analytics_protocols_details.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name, analytics_protocol_description=>$analytics_protocol_description, analytics_protocol_type_id=>$analytics_protocol_type_id, analytics_protocol_type_name=>$analytics_protocol_type_name, analytics_protocol_create_date=>$analytics_protocol_create_date, analytics_protocol_properties=>$analytics_protocol_properties, analytics_protocol_result_summary=>$analytics_protocol_result_summary &>
 557 % } #End analytics_protocol_details
 558 % if ($info_section_id eq 'analytics_protocol_result_files'){
 559                                 <& /analytics_protocols/analytics_protocols_result_files.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name &>
 560 % } #End analytics_protocol_result_files
 561 % if ($info_section_id eq 'model_deletion_section'){
 562                                 <&| /page/info_section.mas, title=>'Delete model', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 563                                     <& /analyses/model_deletion.mas, model_id => $model_id  &>
 564                                 </&>
 565 % } #End model_deletion_section
 566 % if ($info_section_id eq 'manage_file_share_dump'){
 567                                 <& /breeders_toolbox/file_share/file_dump_share_files.mas &>
 568 % } #End manage_file_share_dump
 569
 570 % if ($info_section_id eq 'program_location_section'){
 571                                 <& /breeders_toolbox/program/program_locations.mas, program_id => $program_id &>
 572 % } #End program_location_section
 573 % if ($info_section_id eq 'program_project_section'){
 574                                 <& /breeders_toolbox/program/program_project_section.mas, program_id => $program_id &>
 575 % } #End program_project_section
 576 % if ($info_section_id eq 'program_stock_section'){
 577                                 <& /breeders_toolbox/program/program_stock_section.mas, program_id => $program_id &>
 578 % } #End program_stock_section
 579 % if ($info_section_id eq 'program_phenotype_section'){
 580                                 <& /breeders_toolbox/program/traits.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 581 % } #End program_phenotype_section
 582 % if ($info_section_id eq 'program_product_profile_section'){
 583                                 <& /breeders_toolbox/program/product_profile.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 584 % } #End program_product_profile_section
 585
 586 % if ($info_section_id eq 'activity_project_details'){
 587                                 <& /tracking_activities/activity_project_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner, vendor_id => $vendor_id, parent_project_id => $parent_project_id, activity_type => $activity_type &>
 588 % } #End activity_project_details
 589 % if ($info_section_id eq 'active_tracking_identifiers_section'){
 590                                 <& /tracking_activities/active_tracking_identifiers.mas, trial_id=>$trial_id, field_headers=>$field_headers &>
 591 % } #End active_tracking_identifiers_section
 592 % if ($info_section_id eq 'inactive_tracking_identifiers_section'){
 593                                 <& /tracking_activities/inactive_tracking_identifiers.mas, trial_id=>$trial_id, field_headers=>$field_headers &>
 594 % } #End inactive_tracking_identifiers_section
 595
 596
 597 % if ($info_section_id eq 'transformation_project_details'){
 598                                 <& /transformation/transformation_project_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner, tracking_project_id => $tracking_project_id, autogenerated_name_prefixes => $autogenerated_name_prefixes &>
 599 % } #End transformation_project_details
 600 % if ($info_section_id eq 'transformations_in_project_section'){
 601                                 <& /transformation/transformations_in_project.mas, trial_id=>$trial_id &>
 602 % } #End transformations_in_project_section
 603 % if ($info_section_id eq 'inactive_transformation_ids_in_project_section'){
 604                                 <& /transformation/inactive_transformation_ids_in_project.mas, trial_id=>$trial_id &>
 605 % } #End inactive_transformation_ids_in_project_section
 606
 607
 608 % if (!$info_section_id){
 609                                 <p>No section specified! Main content goes here!</p>
 610 % }
 611
 612                             </div>
 613                         </div>
 614                     </&>
 615                 </div>
 616             </div>
 617         </div>
 618     </div>
 619 </div>