mason/links/related_sites.mas

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   5     <table summary="" width="720" cellpadding="0" cellspacing="0"
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   8         <td>
   9           <h4>Solanaceae Resources on the Web</h4>
  10
  11           <table summary="">
  12             <tr>
  13               <td width="20">&nbsp;</td>
  14
  15               <td>
  16                 <strong>Solanaceae Systematics, Descriptions,
  17                 Images, Germplasms</strong>
  18
  19                 <dl>
  20                   <dt><br /><a href="http://www.ru.nl/bgard/">Experimental Garden and Genebank of the Radboud University of Nijmegen</a></dl>
  21                 <dd>The Experimental Garden and Genebank of the Radboud University of Nijmegen pays special attention to the family of Solanaceae and maintains the most extensive ex situ plant collection of non-tuberous Solanaceae species in the world.  </dd>
  22
  23                 <dl>
  24                   <dt><br /><a href="http://www.ecpgr.cgiar.org/">European Cooperative Programme for Plant Genetic Resources</a></dl>
  25
  26                 <dd>The European Cooperative Programme for Plant Genetic Resources (ECPGR) is a collaborative programme among most European countries aimed at ensuring the long-term conservation and facilitating the increased utilization of plant genetic resources in Europe (<a href="http://www.ecpgr.cgiar.org/networks/vegetables/solanaceae.html">Solanaceae</a>, <a href="http://www.ecpgr.cgiar.org/networks/sugar_starch_fibre_crops/potato.html">Potato</a>)</dd>
  27
  28                 <dl>
  29
  30                   <dt><br /><a href="http://solcap.msu.edu" target="_new" >SolCAP</a></dt>
  31                   <dd>The official website of the USDA sponsored Solanaceae Coordinated Agricultural Project (SolCAP), which will phenotype and genotype large panels of tomato and potato accessions. Results will also be made available on SGN.</dd>
  32                   <dt><a href=
  33                   "http://www.nhm.ac.uk/research-curation/projects/solanaceaesource/" target="_new">Solanum
  34                   Source</a></dt>
  35
  36                   <dd>The official website of the Solanum PBI
  37                   project, containing species descriptions,
  38                   specimen data from herbaria, nomenclatural data
  39                   about names and their places of publication, and
  40                   a bibliography of scientific articles about
  41                   members of the family.</dd>
  42
  43
  44                   <dt><br /><a href=
  45                   "http://www.bgard.science.ru.nl/" target="_new">Nijmegen
  46                   Experimental Garden and Genebank</a> in the
  47                   Netherlands</dt>
  48
  49                   <dd>A botanical garden with one of the major
  50                   collections of Solanaceae plants.</dd>
  51
  52                   <dt><br /><a href="http://cnia.inta.gov.ar/lat-sol" target="_new">Lat-SOL</a></dt>
  53                    <dd>The Latin American SOL initiative</dd>
  54                 </dl>
  55
  56                 <strong>Tomato Resources</strong>
  57
  58
  59
  60                 <dl>
  61                   <dt><a href="http://tomatoma.nbrp.jp/index.jsp" target="_new"> TOMATOMA Database</a>
  62     </dt>
  63     <dd>A database of EMS and Neutron mutants in the MicroTom background in Japan.</dd>
  64
  65     <dt><a href="http://www.agrobios.it/tilling" target="_new"> LycoTILL</a></dt>
  66 <dd>  LycoTILL is an interactive and evolving database which allows search on-line of images and phenotype data of the  tomato (cv /Red Setter/) mutant collection generated with EMS mutagenesis experiments.
  67 The Red Setter mutant population was developed for TILLING applications but can also be used  for forward  genetic studies.</dd>
  68
  69                   <dt><a href="http://phn.huji.ac.il/RTQ/" target="_new" >Phenom Networks</a></dt>
  70                   <dd>The Phenom Network engine by Dani Zamir and Yaniv Semel represents knowledge of complex traits and has tomato ILs, barley and rose traits with more organisms being added soon.</dd>
  71
  72                   <dt><a href="http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/" target="_new" >Tomato SNP database</a></dt>
  73                   <dd>A tomato SNP website by Jose Jimenez and Julin Maloof at UC Davis</dd>
  74
  75                   <dt><br /><a href=
  76                   "http://www.kazusa.or.jp/jsol/microtom/index.html" target="_new">MiBASE</a>, the Kazusa
  77                   Microtom Site</dt>
  78
  79                   <dd>EST and unigene dataset from Microtom,
  80                   including GO annotations and Pathway Viewer.</dd>
  81
  82                   <dt><br /><a href="http://www.pgb.kazusa.or.jp/kaftom/" target="_new" >KaFTom</a></dt>
  83                   <dd>The Kazusa Micro-Tom full-length cDNA Site</dd>
  84
  85                   <dt><br /><a href="http://tgc.ifas.ufl.edu" target="_new">The
  86                   Tomato Genetics Cooperative</a></dt>
  87
  88                   <dd>Homepage of the Tomato Genetics Cooperative
  89                   with access to publications on-line.</dd>
  90
  91                   <dt><br /><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
  92                   Genetic Resource Center (TGRC)</a></dt>
  93
  94                   <dd>Large collection of Solanaceae germplasms,
  95                   with a special focus on tomato.</dd>
  96
  97                   <dt><br /><a href=
  98                   "http://zamir.sgn.cornell.edu/mutants/" target="_new">Genes
  99                   that make Tomatoes</a></dt>
 100
 101                   <dd>Website of a large scale tomato mutagenesis
 102                   and phenotyping project.</dd>
 103
 104                   <dt><br /><a href="http://ted.bti.cornell.edu/" target="_new" >Tomato
 105     Expression Database (TED)</a></dt>
 106
 107                   <dd>Site dedicated to tomato microarrays.</dd>
 108
 109                   <dt><br /><a href=
 110                   "http://www.tomato.org/" target="_new">California Tomato Commission</a></dt>
 111
 112                   <dd>The website of the California Tomato Grower\'s
 113                   Association. Contains nutritional information and
 114                   recipes.</dd>
 115
 116                   <dt><br /><a href=
 117                   "http://www.gardenmosaics.cornell.edu/pgs/science/english/tomatoes.htm" target="_new" >
 118                   Garden Mosaics Science Pages about
 119                   Tomato</a></dt>
 120
 121                   <dd>A website with many pages for teaching about
 122                   plants and plant science, this page for teaching
 123                   about tomatoes.</dd>
 124
 125                   <dt><br /><a href="http://www.ars.usda.gov/Main/site_main.htm?modecode=19-10-05-00" target="_new" >USDA ARS Bioinformatics Homepage</a></dt>
 126
 127                   <dd>The website of the USDA bioinformatics unit
 128                   in Geneva, NY</dd>
 129
 130                   <dt><br /><a href=
 131                   "http://solcap.msu.edu/" target="_new" >
 132                   SolCAP project</a></dt>
 133                   <dd>The Solanaceae Coordinated Agriculture Project</dd>
 134
 135                   <dt><br /><a href=
 136                   "https://www.eu-sol.wur.nl" target="_new" >EU-SOL Tomato Core Collection Phenotype Database</a></dt>
 137                   <dd>The Tomato Core Collection Phenotype Database by the <a href="http://www.eu-sol.net">EU-SOL</a> Project funded by the 6th framework program of the European Union.</dd>
 138
 139                   <dt><br /><a href=
 140                   "http://tomato.nbrp.jp/indexEn.html" target="_new" >Tomato National BioResource Project</a></dt>
 141                   <dd>The National BioResource Project (NBRP) is a national project that aims to collect, preserve, and provide bioresources for life sciences research.</dd>
 142
 143                 </dl>
 144                 <strong>Tomatoes - gardening and heirloom varieties</strong>
 145                 <dl>
 146                 <dt><a href="http://www.tomatogardeningguru.com/" target="_new" >www.tomatogardeningguru.com</a></dt>
 147                 <dd>A website about growing tomatoes organically</dd>
 148                 <dt><a href="http://www.tomatofest.com" target="_new" >TomatoFest.com</a></dt>
 149                 <dd>Heirloom tomato fest</dd>
 150                 </dl>
 151                 <strong>Tomatoes - the lighter side</strong>
 152                 <dl>
 153                 <dt><a href="http://tomatoesareevil.com" target="_new">TomatoesAreEvil.com</a></dt>
 154                 <dd>A website by tomato haters (that\'s definitely not us!)</dd>
 155                 <dt><br /><a href="http://killertomatoes.com" target="_new" >Killertomatoes.com</a></dt>
 156
 157                 <strong>Potato Resources</strong>
 158
 159                 <dl>
 160                   <dt><a href="http://www.public.iastate.edu/~djh/">Potato Phloem Biology Project</a>
 161                  </dt>
 162                   <dd>An NSF funded project to study signaling networks that are involved in the induction of tuber formation.</dd>
 163 </dl>
 164
 165
 166                 <dl>
 167
 168                   <dt><a href="http://www.potatodiseases.org/" target="_new" >PotatoDiseases.org</a></dt>
 169                   <dd>A site describing diseases of potato from the University of Michigan.</dd>
 170
 171                   <dt><a href="http://www.cpgp.ca" target="_new" >Canadian Potato Genome Project</a></dt>
 172                   <dd>The Canadian Potato Genome Project (CPGP) was launched in 2002 to develop resources in gene discovery in potatoes, for use by Canadian researchers and their partners.</dd>
 173
 174                   <dt><a href="https://gabi.rzpd.de/PoMaMo.html" target="_new" >PoMaMo
 175                   Database</a></dt>
 176
 177                   <dd>Potato genome data from the Max-Planck
 178                   Institute for Plant Breeding Research, Cologne,
 179                   Germany, which includes SNP data, maps, marker
 180                   sequences, references and more.</dd>
 181
 182                   <dt><br /><a href="http://www.cipotato.org" target="_new" >Centro
 183                   Internacional de la Papa</a> (International
 184                   Potato Center, Peru)</dt>
 185
 186                   <dd>The International Potato Center in Lima,
 187                   Peru, with potato specific databases and
 188                   resources, such as the <a href=
 189                   "http://grcc.cip.cgiar.org/genebank/" target="_new">CIP Potato
 190                   Genebank</a> and the <a href=
 191                   "http://wpa.riu.cip.cgiar.org/index.php" target="_new" >World Potato
 192                   Atlas</a></dd>
 193
 194                   <dd>A site for potato and biotechnology
 195                   issues.</dd>
 196
 197                   <dt><br /><a href="http://gilb.cip.cgiar.org/" target="_new" >Global
 198                   Initiative for Late Blight (GILB)</a></dt>
 199
 200                   <dd>A collaboration for Late Blight
 201                   research.</dd>
 202
 203                   <dt><br /><a href=
 204                   "http://www.potgenebank.org/" target="_new" >Intergenebank for
 205                   Potato</a></dt>
 206
 207                   <dd>A database containing accession data from
 208                   different genebanks around the world, including
 209                   an SSR database.</dd>
 210
 211                   <!-- dt><br /><a href=
 212                   "http://www.potatogenome.org/nsf4/" target="_new" >PotatoGenome.org</a></dt  DEFUNCT?? -->
 213
 214                   <dt><br /><a href=
 215                   "http://www.europotato.org/" target="_new" >European Cultivated Potato Database</a></dt>
 216
 217
 218
 219                   <dd>The official website of the NSF potato genome
 220                   project.</dd>
 221                 </dl>
 222
 223                 <strong>Pepper Resources</strong>
 224
 225                 <dl>
 226                   <dt><a href=
 227                   "http://plant.pdrc.re.kr/ks200201/pepper.html" target="_new" >KRIBB
 228                   Pepper Resources</a></dt>
 229
 230                   <dd>A pepper EST database at KRIBB</dd>
 231
 232                   <dt><br /><a href=
 233                   "http://www.cnph.embrapa.br/capsicum/" target="_new" >Embrapa
 234                   Capsicum site</a></dt>
 235
 236                   <dd>A site dedicated to Pepper in Brazil</dd>
 237                 </dl>
 238
 239                 <strong>Petunia Resources</strong>
 240
 241                 <dl>
 242                   <dt><a href=
 243                   "http://www.petuniaplatform.net" target="_new" >Petuniaplatform.net</a></dt>
 244
 245                   <dd>A website dedicated to Petunia, with
 246                   contacts, techniques, bibliography and other
 247                   information.</dd>
 248                 </dl>
 249
 250                 <strong>Eggplant Resources</strong>
 251
 252                 <dl>
 253                   <dt><a href=
 254                   "http://www.bgard.science.ru.nl/WWW-IPGRI/eggplant.htm" target="_new" >Eggplant Database</a>
 255                    </dt>
 256 </dl>
 257
 258 <br />
 259                 <strong><i>Solanum dulcamara</i> Resources</strong>
 260
 261                 <dl><dt><a href="http://www.ru.nl/bsweet/">The B'sweet website</a></dt>
 262                   <dd><i>Solanum dulcamara</i> is a new research model for adaptation and ecology. See also <a href="http://www.ru.nl/ecogen/">Nicole van Ham's website</a></dd>
 263
 264                   </dl>
 265
 266                 <strong>Coffee Resources</strong>
 267
 268                 <dl>
 269                   <dt><a href="http://www.coffeedna.net/" target="_new" >CoffeeDNA
 270                   - A site for Coffee Genomics in Italy</a></dt>
 271
 272                   <dd>A site about coffee and coffee genomics.
 273                   Login required for certain functions.</dd>
 274                 </dl>
 275
 276                 <strong>Germplasm Resources</strong>
 277
 278                 <dl>
 279                   <dt><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
 280                   Genetic Resource Center (TGRC)</a></dt>
 281
 282                   <dd>Large collection of Solanaceae germplasms,
 283                   with a special focus on tomato.</dd>
 284
 285                   <dt><br /><a href="http://www.ars-grin.gov/npgs/" target="_new" >GRIN,
 286                   The National Germplasm System</a></dt>
 287
 288                   <dd>Large database of germplasm, integrating many
 289                   germplasm centers in the United States.</dd>
 290                 </dl>
 291
 292                 <strong>Euasterid Resources</strong>
 293
 294                 <dl>
 295                   <dt><a href="http://www.antirrhinum.net" target="_new" >Antirrhinum.net</a></dt>
 296                   <dd>The DragonDB database for Antirrhinum</dd>
 297                 </dl>
 298
 299                 <strong>Other Sequence Resources</strong>
 300
 301                 <dl>
 302                   <dt><a href="http://www.genome.arizona.edu/" target="_new" >The
 303                   Arizona Genome Initiative (AGI)</a></dt>
 304
 305                   <dd>The AGI is the place to <a href=
 306                   "http://www.genome.arizona.edu/orders/" target="_new" >order</a>
 307                   many of the ESTs and BAC clones for many
 308                   Solanaceae species such as potato. Please note
 309                   that BAC and EST <a href=
 310                   "http://ted.bti.cornell.edu/order/" target="_new" >orders</a>
 311                   for tomato are handled by the <a href=
 312                   "http://bti.cornell.edu/" target="_new" >Boyce Thompson
 313                   Institute</a>.</dd>
 314
 315                   <!-- LINK DEAD 11/2008 dt><br /><a href="http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=tomato">The
 316                   Institute for Genomic Research\'s (TIGR) Tomato
 317                   Gene Index</a></dt>
 318
 319                   <dd>The TIGR gene index for tomato.</dd -->
 320
 321                   <!--  LINK DEAD 11/2008 dt><br /><a href=
 322                   "http://grain.jouy.inra.fr/webace/webace?db=solgenes">
 323                   SolGenes</a></dt>
 324
 325                   <dd>The original SolGenes database. Still a
 326                   treasure of information.</dd -->
 327                 </dl>
 328               </td>
 329             </tr>
 330           </table>
 331
 332           <h4><a name="related" id="related"></a>Links to related
 333           websites</h4>
 334
 335           <ul>
 336             <li><a href="http://seedplants.org" target="_new" >Seedplants.org</a>, a site about seed plant descriptions and taxonomy.</li>
 337             <li><a href=
 338             "http://internt.nhm.ac.uk/jdsml/nature-online/seeds-of-trade/" target="_new" >Seeds of
 339             Trade</a> - a virtual book by Henry Hobhouse and Sandra
 340             Knapp about the history of plant cultivation.</li>
 341
 342             <li><a href="http://www.arabidopsis.org" target="_new" >TAIR</a> - The
 343             Arabidopsis Information Resource</li>
 344
 345             <li><a href="http://www.medicago.org" target="_new" >Medicago truncatula</a>
 346             - a model for legume research</li>
 347
 348             <li><a href="http://www.gramene.org" target="_new" >Gramene</a> - a
 349             comparative mapping resource for the grasses</li>
 350
 351             <li><a href="http://cggc.agtec.uga.edu" target="_new" >Comparative
 352             Grass Genomics Center</a> - a comparative resource for
 353             grasses, focusing on <em>Sorghum</em>.</li>
 354
 355             <li><a href=
 356             "http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp" target="_new" >OryzaBase</a>
 357             - Integrated Rice Science Database</li>
 358
 359             <li><a href="http://www.maizeGDB.org" target="_new" >MaizeGDB</a>
 360             - Maize Genetics and Genomics Database</li>
 361
 362             <li><a href="http://www.plantGDB.org" target="_new" >PlantGDB</a> -
 363             Plant Genome DataBase</li>
 364
 365             <li><a href="http://www.ncbi.nlm.nih.gov/" target="_new" >NCBI</a> -
 366             National Center for Biotechnology Information</li>
 367
 368             <li><a href="http://www.biocyc.org" target="_new" >BioCyc</a>,
 369             <a href="http://www.metacyc.org" target="_new" >MetaCyc</a> and
 370             <a href=
 371             "http://www.arabidopsis.org/biocyc/index.jsp" target="_new" >AraCyc</a> -
 372             Collections of curated biochemical pathways.</li>
 373
 374             <li><a href="http://www.genome.ad.jp/kegg/" target="_new" >KEGG</a> -
 375             Kyoto Encyclopedia of Genes and Genomes.</li>
 376
 377             <li><a href="http://www.biomoby.org" target="_new" >The BioMoby
 378             Project</a> - the database interoperability
 379             project</li>
 380
 381             <li><a href="http://www.genomics.cornell.edu" target="_new" >Cornell
 382             Genomics Initiative</a></li>
 383
 384             <li><a href="http://biocurator.org" target="_new" >Biocurator.org</a> - the official site for biocuration.</li>
 385           </ul><br />
 386           <br />
 387           <br />
 388           <br />
 389           <br />
 390         </td>
 391       </tr>
 392     </table>
 393
 394   </center>