cgi-bin/phenome/assign_owner.pl

   1 use Modern::Perl;
   2 use warnings;
   3
   4 use CXGN::Scrap::AjaxPage;
   5 use CXGN::Login;
   6 use CXGN::People::Person;
   7 use CXGN::Feed;
   8 use CatalystX::GlobalContext '$c';
   9
  10 my $dbh = $c->dbc->dbh;
  11
  12 my ( $login_person_id, $login_user_type ) =
  13   CXGN::Login->new($dbh)->verify_session();
  14
  15 if ( $login_user_type eq 'curator' ) {
  16     my $doc = CXGN::Scrap::AjaxPage->new();
  17     $doc->send_http_header();
  18     my ( $user_info, $object_type, $object_id, $sp_person_id ) =
  19       $doc->get_encoded_arguments( "user_info", "object_type", "object_id",
  20         "sp_person_id" );
  21
  22     #query for retreiving user information
  23     if ($user_info) {
  24         my $user_query = $dbh->prepare(
  25 "SELECT sp_person_id, first_name, last_name, user_type FROM sgn_people.sp_person
  26                                      WHERE (first_name ilike '%$user_info%' OR last_name ilike '%$user_info%')
  27                                      ORDER BY last_name
  28                                     "
  29         );
  30         $user_query->execute();
  31         my ( $sp_person_id, $first_name, $last_name, $user_type ) =
  32           $user_query->fetchrow_array();
  33         my $users;
  34         my @roles = ();
  35         while ($first_name) {
  36             my $person = CXGN::People::Person->new( $dbh, $sp_person_id );
  37             @roles = $person->get_roles;
  38             my $role_string = join ',', @roles;
  39             $users .= "$sp_person_id*$last_name, $first_name [$role_string]|";
  40             ( $sp_person_id, $first_name, $last_name, $user_type ) =
  41               $user_query->fetchrow_array();
  42         }
  43         print "$users";
  44     }
  45
  46 #setting the new object owner. Only curators can do this.
  47 #if the user has a 'user' account it will be updated to a 'submitter' first
  48 #executed when javascript sends object_type and object_id , and sp_person_id args
  49     if ( $object_type && $object_id ) {
  50         my $new_owner = CXGN::People::Person->new( $dbh, $sp_person_id );
  51
  52         eval {
  53
  54             #if the new owner is not a submitter, assign that role
  55             if ( !$new_owner->has_role('submitter') ) {
  56                 $new_owner->add_role('submitter');
  57             }
  58             my $query;
  59             if ( $object_type eq 'locus' ) {
  60                 $query = $dbh->prepare(
  61 "INSERT INTO phenome.locus_owner (sp_person_id, locus_id, granted_by)
  62                                         VALUES (?,?,?)"
  63                 );
  64                 $query->execute( $sp_person_id, $object_id, $login_person_id );
  65
  66  #if the current owner of the locus is a logged-in SGN curator, do an obsolete..
  67                 if ( $login_user_type eq 'curator' ) {
  68                     my $remove_curator_query =
  69 "UPDATE phenome.locus_owner SET obsolete='t', modified_date= now()
  70                                           WHERE locus_id=? AND sp_person_id IN (SELECT sp_person_id FROM sgn_people.sp_person_roles WHERE sp_role_id  = (SELECT sp_role_id FROM sgn_people.sp_roles WHERE name = 'curator') )";
  71                     my $remove_curator_sth =
  72                       $dbh->prepare($remove_curator_query);
  73                     $remove_curator_sth->execute($object_id);
  74                 }
  75
  76             }
  77             elsif ( $object_type eq 'individual' ) {
  78                 $query = $dbh->prepare(
  79                     "UPDATE phenome.individual SET sp_person_id= ?
  80                                          WHERE indvidual_id= ?"
  81                 );
  82                 $query->execute( $sp_person_id, $object_id );
  83
  84             }
  85             elsif ( $object_type eq 'stock' ) {
  86                 my $stock =
  87                   $c->dbic_schema( 'Bio::Chado::Schema', 'sgn_chado' )
  88                   ->resultset("Stock::Stock")
  89                   ->find( { stock_id => $object_id } );
  90                 $stock->create_stockprops(
  91                     { 'sp_person_id' => $sp_person_id },
  92                     {
  93                         'cv_name'                => 'local',
  94                         autocreate               => 1,
  95                         'allow_duplicate_values' => 1
  96                     }
  97                 );
  98
  99             }
 100             else { exit(); }
 101         };
 102
 103         if ($@) {
 104             my $message = "assigning $object_type owner failed! $@";
 105             warn $message;
 106             return $message;
 107         }
 108         else {
 109             my $subject =
 110               "[New $object_type owner assigned] $object_type $object_id";
 111             my $person = CXGN::People::Person->new( $dbh, $login_person_id );
 112             my $user =
 113               $person->get_first_name() . " " . $person->get_last_name();
 114             my $user_link =
 115               qq |solgenomics.net/solpeople/personal-info.pl?sp_person_id=$login_person_id|;
 116
 117             my %links = (
 118                 'locus' => qq |solgenomics.net/locus/$object_id/view/|,
 119                 'stock' => qq |solgenomics.net/stock/$object_id/view/|,
 120             );
 121             my $object_link = $links{$object_type};
 122             my $owner = CXGN::People::Person->new( $dbh, $sp_person_id );
 123             my $owner_name =
 124               $owner->get_first_name() . " " . $owner->get_last_name();
 125             my $owner_link =
 126               qq |solgenomics.net/solpeople/personal-info.pl?sp_person_id=$sp_person_id|;
 127             my $fdbk_body =
 128 "curator $user ($user_link) has assigned a new owner ($owner_name, $owner_link) for $object_type $object_link \n ";
 129             CXGN::Contact::send_email( $subject, $fdbk_body,
 130                 'sgn-db-curation@sgn.cornell.edu' );
 131             CXGN::Feed::update_feed( $subject, $fdbk_body );
 132         }
 133     }
 134 }