db/00140/AddVendorSubmissionIDProjectProp.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddVendorSubmissionIDProjectProp.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run AddVendorSubmissionIDProjectProp [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This is a test dummy patch.
  18 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  19
  20 =head1 AUTHOR
  21
  22  Naama Menda<nm249@cornell.edu>
  23
  24 =head1 COPYRIGHT & LICENSE
  25
  26 Copyright 2010 Boyce Thompson Institute for Plant Research
  27
  28 This program is free software; you can redistribute it and/or modify
  29 it under the same terms as Perl itself.
  30
  31 =cut
  32
  33
  34 package AddVendorSubmissionIDProjectProp;
  35
  36 use Moose;
  37 extends 'CXGN::Metadata::Dbpatch';
  38
  39 use Bio::Chado::Schema;
  40
  41 has '+description' => ( default => <<'' );
  42 Description of this patch goes here
  43
  44 has '+prereq' => (
  45     default => sub {
  46         [ ],
  47     },
  48   );
  49
  50 sub patch {
  51     my $self=shift;
  52
  53     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  54
  55     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  56
  57     print STDOUT "\nExecuting the SQL commands.\n";
  58
  59     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  60
  61     print STDERR "INSERTING CV TERMS...\n";
  62
  63     my $terms = {
  64         project_property =>
  65             [
  66              "genotyping_vendor_submission_id",
  67             ],
  68     };
  69
  70
  71
  72     foreach my $t (sort keys %$terms){
  73         foreach (@{$terms->{$t}}){
  74             $schema->resultset("Cv::Cvterm")->create_with(
  75                 {
  76                     name => $_,
  77                     cv => $t
  78                 });
  79         }
  80     }
  81     print STDERR "Patch complete\n";
  82 }
  83
  84
  85 ####
  86 1; #
  87 ####