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  77 <li class="toc-logo"><a href="./"><img src="assets/images/Breedbase_HighRes.png"></a></li>
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  79 <li class="chapter" data-level="" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i>Introduction</a></li>
  80 <li class="chapter" data-level="1" data-path="basic-website-usage.html"><a href="basic-website-usage.html"><i class="fa fa-check"></i><b>1</b> Basic Website Usage</a>
  81 <ul>
  82 <li class="chapter" data-level="1.1" data-path="basic-website-usage.html"><a href="basic-website-usage.html#creating-a-user-account"><i class="fa fa-check"></i><b>1.1</b> Creating a User Account</a>
  83 <ul>
  84 <li class="chapter" data-level="1.1.1" data-path="basic-website-usage.html"><a href="basic-website-usage.html#verifying-first-that-you-do-not-already-have-an-account"><i class="fa fa-check"></i><b>1.1.1</b> Verifying first that you do not already have an account</a></li>
  85 <li class="chapter" data-level="1.1.2" data-path="basic-website-usage.html"><a href="basic-website-usage.html#creating-a-user-account-1"><i class="fa fa-check"></i><b>1.1.2</b> Creating a user account</a></li>
  86 </ul></li>
  87 <li class="chapter" data-level="1.2" data-path="basic-website-usage.html"><a href="basic-website-usage.html#managing-your-account"><i class="fa fa-check"></i><b>1.2</b> Managing your Account</a>
  88 <ul>
  89 <li class="chapter" data-level="1.2.1" data-path="basic-website-usage.html"><a href="basic-website-usage.html#login"><i class="fa fa-check"></i><b>1.2.1</b> Login</a></li>
  90 <li class="chapter" data-level="1.2.2" data-path="basic-website-usage.html"><a href="basic-website-usage.html#editing-account-settings"><i class="fa fa-check"></i><b>1.2.2</b> Editing Account Settings</a></li>
  91 <li class="chapter" data-level="1.2.3" data-path="basic-website-usage.html"><a href="basic-website-usage.html#changing-your-account-status-from-user-to-submitter"><i class="fa fa-check"></i><b>1.2.3</b> Changing Your Account Status: From “User” to “Submitter”</a></li>
  92 <li class="chapter" data-level="1.2.4" data-path="basic-website-usage.html"><a href="basic-website-usage.html#submitting-feedback-on-an-sgn-database"><i class="fa fa-check"></i><b>1.2.4</b> Submitting Feedback on an SGN Database</a></li>
  93 </ul></li>
  94 <li class="chapter" data-level="1.3" data-path="basic-website-usage.html"><a href="basic-website-usage.html#menu-layout"><i class="fa fa-check"></i><b>1.3</b> Menu Layout</a>
  95 <ul>
  96 <li class="chapter" data-level="1.3.1" data-path="basic-website-usage.html"><a href="basic-website-usage.html#menu-options"><i class="fa fa-check"></i><b>1.3.1</b> Menu Options</a></li>
  97 </ul></li>
  98 <li class="chapter" data-level="1.4" data-path="basic-website-usage.html"><a href="basic-website-usage.html#working-with-lists"><i class="fa fa-check"></i><b>1.4</b> Working with Lists</a>
  99 <ul>
 100 <li class="chapter" data-level="1.4.1" data-path="basic-website-usage.html"><a href="basic-website-usage.html#creating-lists"><i class="fa fa-check"></i><b>1.4.1</b> Creating lists</a></li>
 101 <li class="chapter" data-level="1.4.2" data-path="basic-website-usage.html"><a href="basic-website-usage.html#viewing-and-editing-lists"><i class="fa fa-check"></i><b>1.4.2</b> Viewing and editing lists</a></li>
 102 </ul></li>
 103 <li class="chapter" data-level="1.5" data-path="basic-website-usage.html"><a href="basic-website-usage.html#user-permissions"><i class="fa fa-check"></i><b>1.5</b> User Permissions</a></li>
 104 </ul></li>
 105 <li class="chapter" data-level="2" data-path="searching-the-database.html"><a href="searching-the-database.html"><i class="fa fa-check"></i><b>2</b> Searching the Database</a>
 106 <ul>
 107 <li class="chapter" data-level="2.1" data-path="searching-the-database.html"><a href="searching-the-database.html#search-wizard"><i class="fa fa-check"></i><b>2.1</b> The Search Wizard</a>
 108 <ul>
 109 <li class="chapter" data-level="2.1.1" data-path="searching-the-database.html"><a href="searching-the-database.html#how-the-search-wizard-works"><i class="fa fa-check"></i><b>2.1.1</b> How the Search Wizard Works</a></li>
 110 <li class="chapter" data-level="2.1.2" data-path="searching-the-database.html"><a href="searching-the-database.html#how-to-use-retrieved-data"><i class="fa fa-check"></i><b>2.1.2</b> How to use retrieved data</a></li>
 111 <li class="chapter" data-level="2.1.3" data-path="searching-the-database.html"><a href="searching-the-database.html#updating-the-wizard"><i class="fa fa-check"></i><b>2.1.3</b> Updating the Wizard</a></li>
 112 </ul></li>
 113 <li class="chapter" data-level="2.2" data-path="searching-the-database.html"><a href="searching-the-database.html#accessions-and-plot-search"><i class="fa fa-check"></i><b>2.2</b> Accessions and Plot Search</a></li>
 114 <li class="chapter" data-level="2.3" data-path="searching-the-database.html"><a href="searching-the-database.html#trials-search"><i class="fa fa-check"></i><b>2.3</b> Trials Search</a></li>
 115 <li class="chapter" data-level="2.4" data-path="searching-the-database.html"><a href="searching-the-database.html#trait-search"><i class="fa fa-check"></i><b>2.4</b> Trait Search</a></li>
 116 <li class="chapter" data-level="2.5" data-path="searching-the-database.html"><a href="searching-the-database.html#ontology-browser"><i class="fa fa-check"></i><b>2.5</b> Ontology Browser</a></li>
 117 <li class="chapter" data-level="2.6" data-path="searching-the-database.html"><a href="searching-the-database.html#search-seedlots"><i class="fa fa-check"></i><b>2.6</b> Search Seedlots</a></li>
 118 </ul></li>
 119 <li class="chapter" data-level="3" data-path="managing-user-roles.html"><a href="managing-user-roles.html"><i class="fa fa-check"></i><b>3</b> Managing User Roles</a>
 120 <ul>
 121 <li class="chapter" data-level="3.1" data-path="managing-user-roles.html"><a href="managing-user-roles.html#what-are-user-roles"><i class="fa fa-check"></i><b>3.1</b> What are User Roles?</a></li>
 122 <li class="chapter" data-level="3.2" data-path="managing-user-roles.html"><a href="managing-user-roles.html#the-manage-user-roles-page"><i class="fa fa-check"></i><b>3.2</b> The Manage User Roles page</a></li>
 123 </ul></li>
 124 <li class="chapter" data-level="4" data-path="managing-breeding-programs.html"><a href="managing-breeding-programs.html"><i class="fa fa-check"></i><b>4</b> Managing Breeding Programs</a></li>
 125 <li class="chapter" data-level="5" data-path="managing-locations.html"><a href="managing-locations.html"><i class="fa fa-check"></i><b>5</b> Managing Locations</a></li>
 126 <li class="chapter" data-level="6" data-path="managing-accessions.html"><a href="managing-accessions.html"><i class="fa fa-check"></i><b>6</b> Managing Accessions</a>
 127 <ul>
 128 <li class="chapter" data-level="6.1" data-path="managing-accessions.html"><a href="managing-accessions.html#add-accessions-using-a-list"><i class="fa fa-check"></i><b>6.1</b> Add Accessions Using A List</a></li>
 129 <li class="chapter" data-level="6.2" data-path="managing-accessions.html"><a href="managing-accessions.html#uploading-accessions-and-accessions-info-from-a-file"><i class="fa fa-check"></i><b>6.2</b> Uploading Accessions and Accession’s Info From A File</a></li>
 130 <li class="chapter" data-level="6.3" data-path="managing-accessions.html"><a href="managing-accessions.html#email-alert-for-accession-upload"><i class="fa fa-check"></i><b>6.3</b> Email alert for accession upload</a></li>
 131 <li class="chapter" data-level="6.4" data-path="managing-accessions.html"><a href="managing-accessions.html#add-parentage-pedigree-information-to-accessions"><i class="fa fa-check"></i><b>6.4</b> Add Parentage (Pedigree) Information to Accessions</a></li>
 132 <li class="chapter" data-level="6.5" data-path="managing-accessions.html"><a href="managing-accessions.html#working-with-grafts"><i class="fa fa-check"></i><b>6.5</b> Working with grafts</a></li>
 133 <li class="chapter" data-level="6.6" data-path="managing-accessions.html"><a href="managing-accessions.html#bulk-renaming-of-accessions"><i class="fa fa-check"></i><b>6.6</b> Bulk renaming of accessions</a></li>
 134 </ul></li>
 135 <li class="chapter" data-level="7" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html"><i class="fa fa-check"></i><b>7</b> Managing Seed Lots</a>
 136 <ul>
 137 <li class="chapter" data-level="7.1" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#add-new-seedlots"><i class="fa fa-check"></i><b>7.1</b> Add New Seedlot(s)</a></li>
 138 <li class="chapter" data-level="7.2" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#seedlot-transactions"><i class="fa fa-check"></i><b>7.2</b> Seedlot Transactions</a></li>
 139 <li class="chapter" data-level="7.3" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#seed-inventory"><i class="fa fa-check"></i><b>7.3</b> Seed Inventory</a></li>
 140 <li class="chapter" data-level="7.4" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#find-seedlots-for-a-list-of-accessions"><i class="fa fa-check"></i><b>7.4</b> Find Seedlots For a List of Accessions</a></li>
 141 <li class="chapter" data-level="7.5" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#create-a-seedlot-for-an-accession-or-cross"><i class="fa fa-check"></i><b>7.5</b> Create a seedlot for an Accession or Cross</a></li>
 142 <li class="chapter" data-level="7.6" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#add-quality-data-to-a-seedlot"><i class="fa fa-check"></i><b>7.6</b> Add quality data to a seedlot</a></li>
 143 <li class="chapter" data-level="7.7" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#seedlot-maintenance-events"><i class="fa fa-check"></i><b>7.7</b> Seedlot Maintenance Events</a>
 144 <ul>
 145 <li class="chapter" data-level="7.7.1" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#setup"><i class="fa fa-check"></i><b>7.7.1</b> Setup</a></li>
 146 <li class="chapter" data-level="7.7.2" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#adding-events"><i class="fa fa-check"></i><b>7.7.2</b> Adding Events</a></li>
 147 <li class="chapter" data-level="7.7.3" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#displaying-events"><i class="fa fa-check"></i><b>7.7.3</b> Displaying Events</a></li>
 148 <li class="chapter" data-level="7.7.4" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#downloading-events"><i class="fa fa-check"></i><b>7.7.4</b> Downloading Events</a></li>
 149 </ul></li>
 150 <li class="chapter" data-level="7.8" data-path="managing-seed-lots.html"><a href="managing-seed-lots.html#deleting-seedlots"><i class="fa fa-check"></i><b>7.8</b> Deleting Seedlots</a></li>
 151 </ul></li>
 152 <li class="chapter" data-level="8" data-path="managing-populations.html"><a href="managing-populations.html"><i class="fa fa-check"></i><b>8</b> Managing Populations</a></li>
 153 <li class="chapter" data-level="9" data-path="managing-crosses.html"><a href="managing-crosses.html"><i class="fa fa-check"></i><b>9</b> Managing Crosses</a>
 154 <ul>
 155 <li class="chapter" data-level="9.1" data-path="managing-crosses.html"><a href="managing-crosses.html#crossing-experiment"><i class="fa fa-check"></i><b>9.1</b> Crossing Experiment</a>
 156 <ul>
 157 <li class="chapter" data-level="9.1.1" data-path="managing-crosses.html"><a href="managing-crosses.html#add-new-crossing-experiment"><i class="fa fa-check"></i><b>9.1.1</b> Add New Crossing Experiment</a></li>
 158 </ul></li>
 159 <li class="chapter" data-level="9.2" data-path="managing-crosses.html"><a href="managing-crosses.html#cross"><i class="fa fa-check"></i><b>9.2</b> Cross</a>
 160 <ul>
 161 <li class="chapter" data-level="9.2.1" data-path="managing-crosses.html"><a href="managing-crosses.html#add-new-crosses"><i class="fa fa-check"></i><b>9.2.1</b> Add New Crosses</a></li>
 162 <li class="chapter" data-level="9.2.2" data-path="managing-crosses.html"><a href="managing-crosses.html#update-crosses-by-uploading"><i class="fa fa-check"></i><b>9.2.2</b> Update Crosses by Uploading</a></li>
 163 </ul></li>
 164 <li class="chapter" data-level="9.3" data-path="managing-crosses.html"><a href="managing-crosses.html#cross-wishlist"><i class="fa fa-check"></i><b>9.3</b> Cross Wishlist</a>
 165 <ul>
 166 <li class="chapter" data-level="9.3.1" data-path="managing-crosses.html"><a href="managing-crosses.html#create-a-cross-wishlist"><i class="fa fa-check"></i><b>9.3.1</b> Create a Cross Wishlist</a></li>
 167 </ul></li>
 168 <li class="chapter" data-level="9.4" data-path="managing-crosses.html"><a href="managing-crosses.html#crossing-experiment-detail-page"><i class="fa fa-check"></i><b>9.4</b> Crossing Experiment Detail Page</a></li>
 169 <li class="chapter" data-level="9.5" data-path="managing-crosses.html"><a href="managing-crosses.html#cross-detail-page"><i class="fa fa-check"></i><b>9.5</b> Cross Detail Page</a></li>
 170 </ul></li>
 171 <li class="chapter" data-level="10" data-path="managing-field-trials.html"><a href="managing-field-trials.html"><i class="fa fa-check"></i><b>10</b> Managing Field Trials</a>
 172 <ul>
 173 <li class="chapter" data-level="10.1" data-path="managing-field-trials.html"><a href="managing-field-trials.html#trial-detail-page"><i class="fa fa-check"></i><b>10.1</b> Trial Detail Page</a></li>
 174 <li class="chapter" data-level="10.2" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-trials"><i class="fa fa-check"></i><b>10.2</b> Adding Trials</a>
 175 <ul>
 176 <li class="chapter" data-level="10.2.1" data-path="managing-field-trials.html"><a href="managing-field-trials.html#prerequisites"><i class="fa fa-check"></i><b>10.2.1</b> Prerequisites</a></li>
 177 <li class="chapter" data-level="10.2.2" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-a-trial-by-using-add-trial-form"><i class="fa fa-check"></i><b>10.2.2</b> Adding a trial by using “Add Trial” form</a></li>
 178 <li class="chapter" data-level="10.2.3" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-a-trial-from-an-uploaded-file"><i class="fa fa-check"></i><b>10.2.3</b> Adding a trial from an uploaded file</a></li>
 179 <li class="chapter" data-level="10.2.4" data-path="managing-field-trials.html"><a href="managing-field-trials.html#multi-location-trials"><i class="fa fa-check"></i><b>10.2.4</b> Multi-location trials</a></li>
 180 <li class="chapter" data-level="10.2.5" data-path="managing-field-trials.html"><a href="managing-field-trials.html#email-alert-for-multiple-trial-design-upload"><i class="fa fa-check"></i><b>10.2.5</b> Email alert for multiple trial design upload</a></li>
 181 <li class="chapter" data-level="10.2.6" data-path="managing-field-trials.html"><a href="managing-field-trials.html#viewing-plot-layout-and-trait-heatmap"><i class="fa fa-check"></i><b>10.2.6</b> Viewing Plot Layout and Trait HeatMap</a></li>
 182 <li class="chapter" data-level="10.2.7" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-additional-information-in-the-trial-detail-page"><i class="fa fa-check"></i><b>10.2.7</b> Adding additional information in the “Trial Detail” page</a></li>
 183 <li class="chapter" data-level="10.2.8" data-path="managing-field-trials.html"><a href="managing-field-trials.html#downloading-the-trial-layout-from-the-trial-detail-page"><i class="fa fa-check"></i><b>10.2.8</b> Downloading the Trial Layout from the “Trial Detail” page</a></li>
 184 <li class="chapter" data-level="10.2.9" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-plant-entries-to-your-trial"><i class="fa fa-check"></i><b>10.2.9</b> Adding Plant Entries To Your Trial</a></li>
 185 <li class="chapter" data-level="10.2.10" data-path="managing-field-trials.html"><a href="managing-field-trials.html#adding-tissue-sample-entries-to-your-trial"><i class="fa fa-check"></i><b>10.2.10</b> Adding Tissue Sample Entries To Your Trial</a></li>
 186 <li class="chapter" data-level="10.2.11" data-path="managing-field-trials.html"><a href="managing-field-trials.html#uploading-gps-coordinates-for-plots"><i class="fa fa-check"></i><b>10.2.11</b> Uploading GPS Coordinates For Plots</a></li>
 187 <li class="chapter" data-level="10.2.12" data-path="managing-field-trials.html"><a href="managing-field-trials.html#uploading-additional-files-to-trial"><i class="fa fa-check"></i><b>10.2.12</b> Uploading Additional Files To Trial</a></li>
 188 <li class="chapter" data-level="10.2.13" data-path="managing-field-trials.html"><a href="managing-field-trials.html#deleting-trial-data"><i class="fa fa-check"></i><b>10.2.13</b> Deleting Trial Data</a></li>
 189 </ul></li>
 190 </ul></li>
 191 <li class="chapter" data-level="11" data-path="managing-genotyping-plates.html"><a href="managing-genotyping-plates.html"><i class="fa fa-check"></i><b>11</b> Managing Genotyping Plates</a>
 192 <ul>
 193 <li class="chapter" data-level="11.1" data-path="managing-genotyping-plates.html"><a href="managing-genotyping-plates.html#adding-a-new-genotyping-plate"><i class="fa fa-check"></i><b>11.1</b> Adding a New Genotyping Plate</a></li>
 194 <li class="chapter" data-level="11.2" data-path="managing-genotyping-plates.html"><a href="managing-genotyping-plates.html#genotyping-plate-detail-page"><i class="fa fa-check"></i><b>11.2</b> Genotyping Plate Detail Page</a></li>
 195 </ul></li>
 196 <li class="chapter" data-level="12" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html"><i class="fa fa-check"></i><b>12</b> Using Field Book App</a>
 197 <ul>
 198 <li class="chapter" data-level="12.1" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#a-typical-workflow"><i class="fa fa-check"></i><b>12.1</b> A typical workflow</a></li>
 199 <li class="chapter" data-level="12.2" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-layout-files"><i class="fa fa-check"></i><b>12.2</b> Creating Field Layout Files for the Field Book App</a>
 200 <ul>
 201 <li class="chapter" data-level="12.2.1" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-field-layout-files-by-using-field-book-tools-page."><i class="fa fa-check"></i><b>12.2.1</b> Creating “Field Layout Files” by using “Field Book Tools” page.</a></li>
 202 <li class="chapter" data-level="12.2.2" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-field-layout-files-by-using-trial-detail-page."><i class="fa fa-check"></i><b>12.2.2</b> Creating “Field Layout Files” by using “Trial Detail” page.</a></li>
 203 </ul></li>
 204 <li class="chapter" data-level="12.3" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-trait-files"><i class="fa fa-check"></i><b>12.3</b> Creating Trait Files for the Field Book App</a>
 205 <ul>
 206 <li class="chapter" data-level="12.3.1" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-a-trait-list"><i class="fa fa-check"></i><b>12.3.1</b> Creating a Trait List</a></li>
 207 <li class="chapter" data-level="12.3.2" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#creating-a-trait-file"><i class="fa fa-check"></i><b>12.3.2</b> Creating a Trait File</a></li>
 208 </ul></li>
 209 <li class="chapter" data-level="12.4" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#transferring-files-from-your-computer-to-android-tablet"><i class="fa fa-check"></i><b>12.4</b> Transferring Files from Your Computer to Android Tablet</a>
 210 <ul>
 211 <li class="chapter" data-level="12.4.1" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#files-on-your-computer"><i class="fa fa-check"></i><b>12.4.1</b> Files on your computer</a></li>
 212 <li class="chapter" data-level="12.4.2" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#files-on-your-android-tablet"><i class="fa fa-check"></i><b>12.4.2</b> Files on your Android tablet</a></li>
 213 </ul></li>
 214 <li class="chapter" data-level="12.5" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#setting-up-field-book-app-for-data-collection"><i class="fa fa-check"></i><b>12.5</b> Setting up “Field Book App” for data collection</a></li>
 215 <li class="chapter" data-level="12.6" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#exporting-files-from-field-book-app"><i class="fa fa-check"></i><b>12.6</b> Exporting Files from Field Book App</a></li>
 216 <li class="chapter" data-level="12.7" data-path="using-fieldbook-app.html"><a href="using-fieldbook-app.html#uploading-pheno-files"><i class="fa fa-check"></i><b>12.7</b> Uploading Phenotype Files to an SGN database</a></li>
 217 </ul></li>
 218 <li class="chapter" data-level="13" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html"><i class="fa fa-check"></i><b>13</b> Managing Phenotypic Data</a>
 219 <ul>
 220 <li class="chapter" data-level="13.1" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#uploading-fieldbook-phenotypes"><i class="fa fa-check"></i><b>13.1</b> Uploading Fieldbook Phenotypes</a>
 221 <ul>
 222 <li class="chapter" data-level="13.1.1" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#export-field-book-database-file"><i class="fa fa-check"></i><b>13.1.1</b> Export Field Book Database File</a></li>
 223 <li class="chapter" data-level="13.1.2" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#upload-field-book-database-file"><i class="fa fa-check"></i><b>13.1.2</b> Upload Field Book Database File</a></li>
 224 </ul></li>
 225 <li class="chapter" data-level="13.2" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#uploading-spreadsheet-phenotypes"><i class="fa fa-check"></i><b>13.2</b> Uploading Spreadsheet Phenotypes</a>
 226 <ul>
 227 <li class="chapter" data-level="13.2.1" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#generating-spreadsheet-file"><i class="fa fa-check"></i><b>13.2.1</b> Generating Spreadsheet File</a></li>
 228 <li class="chapter" data-level="13.2.2" data-path="managing-phenotypic-data.html"><a href="managing-phenotypic-data.html#uploading-spreadsheet-file"><i class="fa fa-check"></i><b>13.2.2</b> Uploading Spreadsheet File</a></li>
 229 </ul></li>
 230 </ul></li>
 231 <li class="chapter" data-level="14" data-path="managing-barcodes.html"><a href="managing-barcodes.html"><i class="fa fa-check"></i><b>14</b> Managing Barcodes</a></li>
 232 <li class="chapter" data-level="15" data-path="using-the-label-designer.html"><a href="using-the-label-designer.html"><i class="fa fa-check"></i><b>15</b> Using the Label Designer</a>
 233 <ul>
 234 <li class="chapter" data-level="15.0.1" data-path="using-the-label-designer.html"><a href="using-the-label-designer.html#first-select-a-datasource"><i class="fa fa-check"></i><b>15.0.1</b> First Select a Datasource</a></li>
 235 <li class="chapter" data-level="15.0.2" data-path="using-the-label-designer.html"><a href="using-the-label-designer.html#set-page-and-label-size"><i class="fa fa-check"></i><b>15.0.2</b> Set Page and Label Size</a></li>
 236 <li class="chapter" data-level="15.0.3" data-path="using-the-label-designer.html"><a href="using-the-label-designer.html#design-your-label"><i class="fa fa-check"></i><b>15.0.3</b> Design Your Label</a></li>
 237 <li class="chapter" data-level="15.0.4" data-path="using-the-label-designer.html"><a href="using-the-label-designer.html#adjust-formatting-save-and-download"><i class="fa fa-check"></i><b>15.0.4</b> Adjust Formatting, Save, and Download</a></li>
 238 </ul></li>
 239 <li class="chapter" data-level="16" data-path="managing-downloads.html"><a href="managing-downloads.html"><i class="fa fa-check"></i><b>16</b> Managing Downloads</a></li>
 240 <li class="chapter" data-level="17" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html"><i class="fa fa-check"></i><b>17</b> Managing ODK Data Collection</a>
 241 <ul>
 242 <li class="chapter" data-level="17.1" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html#ona-crossing-information"><i class="fa fa-check"></i><b>17.1</b> ONA Crossing Information</a>
 243 <ul>
 244 <li class="chapter" data-level="17.1.1" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html#managing-ona-crossing-information"><i class="fa fa-check"></i><b>17.1.1</b> Managing ONA Crossing Information</a></li>
 245 <li class="chapter" data-level="17.1.2" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html#reviewing-plant-status"><i class="fa fa-check"></i><b>17.1.2</b> Reviewing Plant Status</a></li>
 246 <li class="chapter" data-level="17.1.3" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html#graphical-summary-for-performed-crosses"><i class="fa fa-check"></i><b>17.1.3</b> Graphical Summary For Performed Crosses</a></li>
 247 <li class="chapter" data-level="17.1.4" data-path="managing-odk-data-collection.html"><a href="managing-odk-data-collection.html#summary-information-for-performed-crosses"><i class="fa fa-check"></i><b>17.1.4</b> Summary Information For Performed Crosses</a></li>
 248 </ul></li>
 249 </ul></li>
 250 <li class="chapter" data-level="18" data-path="managing-tissue-samples.html"><a href="managing-tissue-samples.html"><i class="fa fa-check"></i><b>18</b> Managing Tissue Samples</a>
 251 <ul>
 252 <li class="chapter" data-level="18.1" data-path="managing-tissue-samples.html"><a href="managing-tissue-samples.html#tissue-samples-from-field-trials"><i class="fa fa-check"></i><b>18.1</b> Tissue samples from field trials</a></li>
 253 <li class="chapter" data-level="18.2" data-path="managing-tissue-samples.html"><a href="managing-tissue-samples.html#genotyping-plate-tissue-samples-96-or-384-well-plates"><i class="fa fa-check"></i><b>18.2</b> Genotyping Plate Tissue Samples (96 or 384 well plates)</a></li>
 254 </ul></li>
 255 <li class="chapter" data-level="19" data-path="managing-observation-variables.html"><a href="managing-observation-variables.html"><i class="fa fa-check"></i><b>19</b> Managing Observation Variables</a>
 256 <ul>
 257 <li class="chapter" data-level="19.1" data-path="managing-observation-variables.html"><a href="managing-observation-variables.html#managing-observation-variables-with-traits-methods-and-scales"><i class="fa fa-check"></i><b>19.1</b> Managing Observation Variables with Traits, Methods, and Scales</a></li>
 258 </ul></li>
 259 <li class="chapter" data-level="20" data-path="managing-image-data.html"><a href="managing-image-data.html"><i class="fa fa-check"></i><b>20</b> Managing Image Data</a>
 260 <ul>
 261 <li class="chapter" data-level="20.1" data-path="managing-image-data.html"><a href="managing-image-data.html#image-phenotyping-dashboard"><i class="fa fa-check"></i><b>20.1</b> Image-Phenotyping Dashboard</a></li>
 262 <li class="chapter" data-level="20.2" data-path="managing-image-data.html"><a href="managing-image-data.html#image-input"><i class="fa fa-check"></i><b>20.2</b> Image Input</a></li>
 263 <li class="chapter" data-level="20.3" data-path="managing-image-data.html"><a href="managing-image-data.html#standard-process"><i class="fa fa-check"></i><b>20.3</b> Standard Process</a></li>
 264 <li class="chapter" data-level="20.4" data-path="managing-image-data.html"><a href="managing-image-data.html#ground-control-points"><i class="fa fa-check"></i><b>20.4</b> Ground Control Points</a></li>
 265 </ul></li>
 266 <li class="chapter" data-level="21" data-path="managing-vcf-data.html"><a href="managing-vcf-data.html"><i class="fa fa-check"></i><b>21</b> Managing VCF Data</a>
 267 <ul>
 268 <li class="chapter" data-level="21.1" data-path="managing-vcf-data.html"><a href="managing-vcf-data.html#uploading-vcf-data"><i class="fa fa-check"></i><b>21.1</b> Uploading VCF Data</a></li>
 269 <li class="chapter" data-level="21.2" data-path="managing-vcf-data.html"><a href="managing-vcf-data.html#searching-and-downloading-vcf-data"><i class="fa fa-check"></i><b>21.2</b> Searching and Downloading VCF Data</a></li>
 270 <li class="chapter" data-level="21.3" data-path="managing-vcf-data.html"><a href="managing-vcf-data.html#searching-protocols"><i class="fa fa-check"></i><b>21.3</b> Searching Protocols</a></li>
 271 <li class="chapter" data-level="21.4" data-path="managing-vcf-data.html"><a href="managing-vcf-data.html#detail-pages-and-deletion"><i class="fa fa-check"></i><b>21.4</b> Detail Pages and Deletion</a></li>
 272 </ul></li>
 273 <li class="chapter" data-level="22" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html"><i class="fa fa-check"></i><b>22</b> Managing Spectral Data</a>
 274 <ul>
 275 <li class="chapter" data-level="22.1" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html#upload-spectral-data"><i class="fa fa-check"></i><b>22.1</b> Upload Spectral Data</a></li>
 276 <li class="chapter" data-level="22.2" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html#evaluate-and-remove-outliers"><i class="fa fa-check"></i><b>22.2</b> Evaluate and Remove Outliers</a></li>
 277 <li class="chapter" data-level="22.3" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html#plot-spectra"><i class="fa fa-check"></i><b>22.3</b> Plot Spectra</a></li>
 278 <li class="chapter" data-level="22.4" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html#aggregate-spectra"><i class="fa fa-check"></i><b>22.4</b> Aggregate Spectra</a></li>
 279 <li class="chapter" data-level="22.5" data-path="managing-spectral-data.html"><a href="managing-spectral-data.html#references"><i class="fa fa-check"></i><b>22.5</b> References</a></li>
 280 </ul></li>
 281 <li class="chapter" data-level="23" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html"><i class="fa fa-check"></i><b>23</b> Managing Sequence Metadata</a>
 282 <ul>
 283 <li class="chapter" data-level="23.1" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#what-is-sequence-metadata"><i class="fa fa-check"></i><b>23.1</b> What is Sequence Metadata?</a></li>
 284 <li class="chapter" data-level="23.2" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#loading-sequence-metadata"><i class="fa fa-check"></i><b>23.2</b> Loading Sequence Metadata</a></li>
 285 <li class="chapter" data-level="23.3" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#searching-sequence-metadata"><i class="fa fa-check"></i><b>23.3</b> Searching Sequence Metadata</a>
 286 <ul>
 287 <li class="chapter" data-level="23.3.1" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#basic-search"><i class="fa fa-check"></i><b>23.3.1</b> Basic Search</a></li>
 288 <li class="chapter" data-level="23.3.2" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#advanced-search"><i class="fa fa-check"></i><b>23.3.2</b> Advanced Search</a></li>
 289 </ul></li>
 290 <li class="chapter" data-level="23.4" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#marker-integration"><i class="fa fa-check"></i><b>23.4</b> Marker Integration</a></li>
 291 <li class="chapter" data-level="23.5" data-path="managing-sequence-metadata.html"><a href="managing-sequence-metadata.html#sequence-metadata-api"><i class="fa fa-check"></i><b>23.5</b> Sequence Metadata API</a></li>
 292 </ul></li>
 293 <li class="chapter" data-level="24" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html"><i class="fa fa-check"></i><b>24</b> Managing Outliers in Dataset</a>
 294 <ul>
 295 <li class="chapter" data-level="24.1" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#what-is-outliers-functionality-in-dataset"><i class="fa fa-check"></i><b>24.1</b> What is Outliers Functionality in Dataset ?</a></li>
 296 <li class="chapter" data-level="24.2" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#accessing-trait-visualization"><i class="fa fa-check"></i><b>24.2</b> Accessing Trait Visualization</a></li>
 297 <li class="chapter" data-level="24.3" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#interpreting-visual-elements"><i class="fa fa-check"></i><b>24.3</b> Interpreting Visual Elements</a></li>
 298 <li class="chapter" data-level="24.4" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#choosing-cut-off-values"><i class="fa fa-check"></i><b>24.4</b> Choosing Cut-Off Values</a></li>
 299 <li class="chapter" data-level="24.5" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#setting-deviation-multiplier"><i class="fa fa-check"></i><b>24.5</b> Setting Deviation Multiplier</a></li>
 300 <li class="chapter" data-level="24.6" data-path="managing-outliers-in-dataset.html"><a href="managing-outliers-in-dataset.html#utilizing-graph-controls"><i class="fa fa-check"></i><b>24.6</b> Utilizing Graph Controls</a></li>
 301 </ul></li>
 302 <li class="chapter" data-level="25" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html"><i class="fa fa-check"></i><b>25</b> Data Analysis Tools</a>
 303 <ul>
 304 <li class="chapter" data-level="25.1" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#selection-index"><i class="fa fa-check"></i><b>25.1</b> Selection Index</a></li>
 305 <li class="chapter" data-level="25.2" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#genomic-selection"><i class="fa fa-check"></i><b>25.2</b> Genomic Selection</a>
 306 <ul>
 307 <li class="chapter" data-level="25.2.1" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#method-1"><i class="fa fa-check"></i><b>25.2.1</b> Building a Model - Method 1:</a></li>
 308 <li class="chapter" data-level="25.2.2" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#method-2"><i class="fa fa-check"></i><b>25.2.2</b> Building a Model - Method 2</a></li>
 309 <li class="chapter" data-level="25.2.3" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#building-a-model---method-3"><i class="fa fa-check"></i><b>25.2.3</b> Building a Model - Method 3</a></li>
 310 </ul></li>
 311 <li class="chapter" data-level="25.3" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#genome-browsing"><i class="fa fa-check"></i><b>25.3</b> Genome Browsing</a>
 312 <ul>
 313 <li class="chapter" data-level="25.3.1" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#browsing-genotype-data-by-accession"><i class="fa fa-check"></i><b>25.3.1</b> Browsing Genotype data by Accession</a></li>
 314 <li class="chapter" data-level="25.3.2" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#browsing-genotype-data-by-trial"><i class="fa fa-check"></i><b>25.3.2</b> Browsing Genotype data by Trial</a></li>
 315 </ul></li>
 316 <li class="chapter" data-level="25.4" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#principal-component-analysis-pca"><i class="fa fa-check"></i><b>25.4</b> Principal Component Analysis (PCA)</a></li>
 317 <li class="chapter" data-level="25.5" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#anova"><i class="fa fa-check"></i><b>25.5</b> ANOVA</a></li>
 318 <li class="chapter" data-level="25.6" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#clustering-k-means-hierarchical"><i class="fa fa-check"></i><b>25.6</b> Clustering (K-Means, Hierarchical)</a></li>
 319 <li class="chapter" data-level="25.7" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#genetic-gain"><i class="fa fa-check"></i><b>25.7</b> Genetic Gain</a></li>
 320 <li class="chapter" data-level="25.8" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#kinship-and-inbreeding-coefficients"><i class="fa fa-check"></i><b>25.8</b> Kinship and Inbreeding Coefficients</a></li>
 321 <li class="chapter" data-level="25.9" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#creating-crossing-groups"><i class="fa fa-check"></i><b>25.9</b> Creating Crossing Groups</a></li>
 322 <li class="chapter" data-level="25.10" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#search-wizard-genomic-relationship-matrix-grm-download"><i class="fa fa-check"></i><b>25.10</b> Search Wizard Genomic Relationship Matrix (GRM) Download</a></li>
 323 <li class="chapter" data-level="25.11" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#search-wizard-genome-wide-association-study-gwas"><i class="fa fa-check"></i><b>25.11</b> Search Wizard Genome Wide Association Study (GWAS)</a></li>
 324 <li class="chapter" data-level="25.12" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#spectral-analysis"><i class="fa fa-check"></i><b>25.12</b> Spectral Analysis</a>
 325 <ul>
 326 <li class="chapter" data-level="25.12.1" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#dataset-selection"><i class="fa fa-check"></i><b>25.12.1</b> Dataset selection</a></li>
 327 <li class="chapter" data-level="25.12.2" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#cross-validation"><i class="fa fa-check"></i><b>25.12.2</b> Cross-validation</a></li>
 328 <li class="chapter" data-level="25.12.3" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#preprocessing"><i class="fa fa-check"></i><b>25.12.3</b> Preprocessing</a></li>
 329 <li class="chapter" data-level="25.12.4" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#algorithms"><i class="fa fa-check"></i><b>25.12.4</b> Algorithms</a></li>
 330 <li class="chapter" data-level="25.12.5" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#output-common-model-summary-statistics"><i class="fa fa-check"></i><b>25.12.5</b> Output: common model summary statistics</a></li>
 331 <li class="chapter" data-level="25.12.6" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#export-model-for-later-use"><i class="fa fa-check"></i><b>25.12.6</b> Export model for later use</a></li>
 332 <li class="chapter" data-level="25.12.7" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#predict-phenotypes-from-an-exported-model-routine-use"><i class="fa fa-check"></i><b>25.12.7</b> Predict phenotypes from an exported model (routine use)</a></li>
 333 <li class="chapter" data-level="25.12.8" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#faq"><i class="fa fa-check"></i><b>25.12.8</b> FAQ</a></li>
 334 </ul></li>
 335 <li class="chapter" data-level="25.13" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#general-mixed-model-tool"><i class="fa fa-check"></i><b>25.13</b> General Mixed Model Tool</a></li>
 336 <li class="chapter" data-level="25.14" data-path="data-analysis-tools.html"><a href="data-analysis-tools.html#genomic-prediction-of-cross-performance-gcpc"><i class="fa fa-check"></i><b>25.14</b> Genomic Prediction of Cross Performance (GCPC)</a></li>
 337 </ul></li>
 338 <li class="divider"></li>
 339 <li><a href="https://bookdown.org/" target="blank">Published with bookdown</a></li>
 340 </ul>
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 357 <div id="managing-seed-lots" class="section level1 hasAnchor" number="7">
 358 <h1><span class="header-section-number">Chapter 7</span> Managing Seed Lots<a href="managing-seed-lots.html#managing-seed-lots" class="anchor-section" aria-label="Anchor link to header"></a></h1>
 359 <p>Seedlots are different from Accessions in that they represent the physical seed being evaluated in an experiment. Seedlots have things like physical storage locations and seed quantities, which accessions do not. The seed in seedlots can be from crosses or can be named accessions. Seedlots from crosses would represent seed harvested. Click Manage and then Seed Lots to begin.</p>
 360 <p><img src="assets/images/manage_seedlots.png" width="95%" style="display: block; margin: auto;" /></p>
 361 <div id="add-new-seedlots" class="section level2 hasAnchor" number="7.1">
 362 <h2><span class="header-section-number">7.1</span> Add New Seedlot(s)<a href="managing-seed-lots.html#add-new-seedlots" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 363 <p>To add a single new seedlot, click on “Add Seedlot”. This will bring up the following dialog where you enter information about where the seedlot exists, what accession or cross is contained in it, and how many seeds there are. A seedlot must contain either an accession or a cross, and not both. A seedlot must have a weight in grams or a seed count or both of these.</p>
 364 <p><img src="assets/images/manage_seedlot_add_seedlot.png" width="95%" style="display: block; margin: auto;" /></p>
 365 <p>In the case where you have many seedlots to add to the database, you can upload an excel XLS or XLSX file instead. Click “Upload Seedlots” to see the following dialog.</p>
 366 <p><img src="assets/images/manage_seedlot_upload_seedlots.png" width="95%" style="display: block; margin: auto;" /></p>
 367 </div>
 368 <div id="seedlot-transactions" class="section level2 hasAnchor" number="7.2">
 369 <h2><span class="header-section-number">7.2</span> Seedlot Transactions<a href="managing-seed-lots.html#seedlot-transactions" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 370 <p>Seedlots are capable of tracking where seeds came from, such as from crosses, and to where seeds go, such as to plots in the field. If you navigate to a seedlot detail page you will see the following.</p>
 371 <p><img src="assets/images/seedlot_detail_page.png" width="95%" style="display: block; margin: auto;" /></p>
 372 <p>On this page you see and can edit information regarding a single seedlot, such as its name and location. You will also see a table indicating all t he transactions that a seedlot has been involved in, such as if it was planted in a plot in the field. Transactions to field plots are created when adding or uploading a new trial or from a trial’s detail page. Clicking on “Add New Transaction” let you add a transaction from between this seedlot and another seedlot. This kind of transaction is useful for representing if you have distributed seed to different locations.</p>
 373 <p><img src="assets/images/seedlot_add_new_transaction.png" width="95%" style="display: block; margin: auto;" /></p>
 374 </div>
 375 <div id="seed-inventory" class="section level2 hasAnchor" number="7.3">
 376 <h2><span class="header-section-number">7.3</span> Seed Inventory<a href="managing-seed-lots.html#seed-inventory" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 377 <p>To inventory your seed:
 378 1) Make sure your seedlots are in the database. Use “Add New Seedlot” to add a single seedlot or “Upload New Seedlots” to add many.
 379 2) Make sure your seedlots are barcoded. You can print these barcodes from the database.
 380 3) Use the “Inventory” Android Application to scan seedlot barcodes and record weight. Then use “Upload Inventory” to upload this info into database. If you prefer you can create your own CSV file and upload that, if you do not want to use the Inventory Application.
 381 <b>For more info about the “Inventory” Android Application go to <a href="https://play.google.com/store/apps/details?id=org.wheatgenetics.inventory/">Inventory</a></b>.</p>
 382 <p>Clicking the “Upload Inventory” button will bring the following dialog:</p>
 383 <p><img src="assets/images/manage_seedlot_upload_inventory.png" width="95%" style="display: block; margin: auto;" /></p>
 384 <p>The CSV file that should contain your inventory should meet these Template requirements. The Seed Inventory Android Application exports this exact file.</p>
 385 <p><img src="assets/images/manage_seedlot_upload_inventory_template.png" width="95%" style="display: block; margin: auto;" /></p>
 386 </div>
 387 <div id="find-seedlots-for-a-list-of-accessions" class="section level2 hasAnchor" number="7.4">
 388 <h2><span class="header-section-number">7.4</span> Find Seedlots For a List of Accessions<a href="managing-seed-lots.html#find-seedlots-for-a-list-of-accessions" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 389 <p>A convenient tool for searching available seedlots for a list of accessions is available in the list tool. First open up your list of accessions. For help opening a list of accessions please see the List section help. There is a button called “See Available Seedlots”.</p>
 390 <p><img src="assets/images/manage_seedlot_accession_list_search.png" width="75%" style="display: block; margin: auto;" /></p>
 391 <p>Once you click this, you will see the following table in a dialog. From here you can create a list of seedlots using the checkboxes and the input at the bottom.</p>
 392 <p><img src="assets/images/manage_seedlot_list_available_seedlots.png" width="95%" style="display: block; margin: auto;" /></p>
 393 </div>
 394 <div id="create-a-seedlot-for-an-accession-or-cross" class="section level2 hasAnchor" number="7.5">
 395 <h2><span class="header-section-number">7.5</span> Create a seedlot for an Accession or Cross<a href="managing-seed-lots.html#create-a-seedlot-for-an-accession-or-cross" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 396 <p>Complementary to what we saw above for creating seedlots from the “Manage Seedlots” page, it is possible to create a new seedlot from an accession’s detail page or from the cross detail page. On the accession detail page, this is visible in the “Related Stocks” section as seen below. The cross detail page has an identical section. Notice the link for creating a new seedlot, which streamlines adding the seedlot.</p>
 397 <p><img src="assets/images/manage_seedlot_accession_detail.png" width="95%" style="display: block; margin: auto;" /></p>
 398 </div>
 399 <div id="add-quality-data-to-a-seedlot" class="section level2 hasAnchor" number="7.6">
 400 <h2><span class="header-section-number">7.6</span> Add quality data to a seedlot<a href="managing-seed-lots.html#add-quality-data-to-a-seedlot" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 401 <p>Quality information can be added to a seedlot in the quality field. This is also available as a column in the file upload format. It is recommended to use a controlled vocabulary, defined by the user, for the quality field. For example, good quality seed should be labelled “ok”, whereas other quality descriptors could be “moldy”, “insect damage”, or “low sprouting”, etc.</p>
 402 </div>
 403 <div id="seedlot-maintenance-events" class="section level2 hasAnchor" number="7.7">
 404 <h2><span class="header-section-number">7.7</span> Seedlot Maintenance Events<a href="managing-seed-lots.html#seedlot-maintenance-events" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 405 <p>For some crops, such as sugar kelp, a “seedlot” requires routine maintenance for the successful long-term storage of the seedlot. (For example, a Seedlot Maintenance Event for sugar kelp would be the routine change of the water that gametophytes are kept it). Breedbase can now store a record of these Seedlot Maintenance Events associated directly with existing Seedlots. Maintenance Events can be uploaded using a simple Excel template or recorded directly on the website.</p>
 406 <div id="setup" class="section level3 hasAnchor" number="7.7.1">
 407 <h3><span class="header-section-number">7.7.1</span> Setup<a href="managing-seed-lots.html#setup" class="anchor-section" aria-label="Anchor link to header"></a></h3>
 408 <p>Each Breedbase instance needs to be configured to support the storage of Seedlot Maintenance Events since each crop will have their own distinct set of maintenance events for their seedlots. To check if your Breedbase instance supports this feature, go to the Manage menu and select the Seed Lots page. Make sure you are logged in and look for the <strong>Seedlot Maintenance</strong> button near the top, next to the <strong>Create Seedlot(s)</strong> and <strong>Upload Inventory</strong> buttons. If you don’t see this button, contact the developer(s) supporting your Breedbase instance and ask if they can setup this feature.</p>
 409 <p><img src="assets/images/manage_seedlots_seedlot_maintenance.png" width="95%" style="display: block; margin: auto;" />
 410 <em>The location of the Seedlot Maintenance button on the Manage &gt; Seed Lots page</em></p>
 411 </div>
 412 <div id="adding-events" class="section level3 hasAnchor" number="7.7.2">
 413 <h3><span class="header-section-number">7.7.2</span> Adding Events<a href="managing-seed-lots.html#adding-events" class="anchor-section" aria-label="Anchor link to header"></a></h3>
 414 <p>Seedlot Maintenance Events can be added using two methods: 1) Uploading an Excel template or 2) Recording events directly on the website</p>
 415 <div id="uploading-events-with-excel-template" class="section level4 unnumbered hasAnchor">
 416 <h4>Uploading Events with Excel Template<a href="managing-seed-lots.html#uploading-events-with-excel-template" class="anchor-section" aria-label="Anchor link to header"></a></h4>
 417 <p>To bulk-upload a file of Seedlot Maintenance Events, first create an Excel (.xls or .xlsx) file with the following headers:</p>
 418 <ul>
 419 <li><strong>seedlot</strong> - the name of the Seedlot to associate the event with (must exactly match an existing Seedlot in the database)</li>
 420 <li><strong>type</strong> - the name of the Seedlot Maintenance Event type (these vary between Breedbase instances, a list of supported event types is displayed on the upload page)</li>
 421 <li><strong>value</strong> - the value of the Seedlot Maintenance Event (these may be different for each event type and vary between Breedbase instances, a list of supported event values is displayed on the upload page)</li>
 422 <li><strong>notes</strong> - optional, additional notes/comments about the event</li>
 423 <li><strong>operator</strong> - the username of the Breedbase user that recorded the event</li>
 424 <li><strong>timestamp</strong> - the date/time the event was recorded, in ‘YYYY-MM-DD HH:MM:SS’ format</li>
 425 </ul>
 426 <p>Once you have an Excel file with the events filled out, follow these steps to upload the events to the database:</p>
 427 <ol style="list-style-type: decimal">
 428 <li>Make sure you are logged in to your Breedbase instance</li>
 429 <li>Go to the Manage &gt; Seed Lots page</li>
 430 <li>Select the <strong>Seedlot Maintenance</strong> button</li>
 431 <li>Select the <strong>Upload Maintenance</strong> button</li>
 432 <li>Choose your Excel (.xls or .xlsx) file to upload</li>
 433 <li>Select the <strong>Upload</strong> button</li>
 434 </ol>
 435 <p><img src="assets/images/seedlot_maintenance_upload.png" width="95%" style="display: block; margin: auto;" />
 436 <em>The Seedlot Maintenance upload dialog, showing the supported event types and values (for sugar kelp)</em></p>
 437 </div>
 438 <div id="recording-events-on-website" class="section level4 unnumbered hasAnchor">
 439 <h4>Recording Events on Website<a href="managing-seed-lots.html#recording-events-on-website" class="anchor-section" aria-label="Anchor link to header"></a></h4>
 440 <p>To add individual Seedlot Maintenance Events to the database in real time, as they’re being recorded, use the <strong>Record Maintenance</strong> page. Follow these steps to record Seedlot Maintenance Events:</p>
 441 <ol style="list-style-type: decimal">
 442 <li>Make sure you are logged in to your Breedbase instance</li>
 443 <li>Go to the Manage &gt; Seed Lots page</li>
 444 <li>Select the <strong>Seedlot Maintenance</strong> button</li>
 445 <li>Select the <strong>Record Maintenance</strong> button</li>
 446 <li>Enter the <strong>Seedlot Name</strong> or scan a barcode that has the Seedlot Name encoded. Once entered, the box at the top of the page will display basic information about the Seedlot as well its recently recorded events.</li>
 447 <li>Select or Enter the values of individual events</li>
 448 <li>Optionally, notes button next to each event to add additional notes/comments about that specific event</li>
 449 <li>Make sure the operator/username and timestamp are correct</li>
 450 <li>Select the <strong>Submit</strong> button to add the recorded events to the database. NOTE: any events that remain selected as “Not Recorded” will not be submitted to the database.</li>
 451 </ol>
 452 <p><img src="assets/images/seedlot_maintenance_record.png" width="95%" style="display: block; margin: auto;" />
 453 <em>The Seedlot Maintenance record page, as configured for sugar kelp</em></p>
 454 </div>
 455 </div>
 456 <div id="displaying-events" class="section level3 hasAnchor" number="7.7.3">
 457 <h3><span class="header-section-number">7.7.3</span> Displaying Events<a href="managing-seed-lots.html#displaying-events" class="anchor-section" aria-label="Anchor link to header"></a></h3>
 458 <p>Recently recorded Seedlot Maintenance Events are displayed in a table from the main Seedlot Maintenance page, as well as the detail page for individual Seedlots.</p>
 459 <p><img src="assets/images/seedlot_maintenance_events_unfiltered.png" width="95%" style="display: block; margin: auto;" />
 460 <em>Unfiltered table of recent Seedlot Maintenance events</em></p>
 461 <p>The events displayed in these tables are sorted by timestamp, with the most recently recorded events displayed first. The displayed events can be filtered using any number of supported filter criteria, such as:
 462 - seedlot names (as entered on the page or using an existing seedlot list),
 463 - dates (on, on or before, before, on or after, and/or after the entered dates)
 464 - event types
 465 - event type values
 466 - operator/username</p>
 467 <p>Select the properties of the filter(s) you want to apply, then select the <strong>Add</strong> button next to the button to add the filter to the list of applied filters. Once you’re done adding filters, select the <strong>Filter</strong> button to search the database for the filtered events.</p>
 468 <p><img src="assets/images/seedlot_maintenance_events_filtered.png" width="95%" style="display: block; margin: auto;" />
 469 <em>A filtered table of Seedlot Maintenance events</em></p>
 470 <p>The filtered events can be downloaded directly from the table using the <strong>Excel</strong> or <strong>CSV</strong> buttons at the top of the table. Or Seedlot Maintenance Events can be bulk-downloaded (this includes all events for a Seedlot) using a list of Seedlots from the main downloads page (see below).</p>
 471 </div>
 472 <div id="downloading-events" class="section level3 hasAnchor" number="7.7.4">
 473 <h3><span class="header-section-number">7.7.4</span> Downloading Events<a href="managing-seed-lots.html#downloading-events" class="anchor-section" aria-label="Anchor link to header"></a></h3>
 474 <p>To bulk-download all events for a specific subset of Seedlots:</p>
 475 <ol style="list-style-type: decimal">
 476 <li>Create a list containing the Seelots you are interested in.</li>
 477 <li>Go to the <strong>Download Using Lists</strong> page (Manage &gt; Download)</li>
 478 <li>Find the <strong>Download Seedlot Maintenance Events</strong> section</li>
 479 <li>Select your list of Seedlots</li>
 480 <li>Select the <strong>Download</strong> button to generate the download file</li>
 481 </ol>
 482 <p>The downloaded file will follow the same format as the upload template and will contain all recorded Seedlot Maintenance Events for each Seedlot in the list.</p>
 483 </div>
 484 </div>
 485 <div id="deleting-seedlots" class="section level2 hasAnchor" number="7.8">
 486 <h2><span class="header-section-number">7.8</span> Deleting Seedlots<a href="managing-seed-lots.html#deleting-seedlots" class="anchor-section" aria-label="Anchor link to header"></a></h2>
 487 <p>Seedlots can be deleted on the Manage Seedlots page (/breeders/seedlots) by search the seedlot and then clicking the X to delete one seedlot at a time. To delete a seedlot, the logged in user needs the required delete privileges on the seedlot. The seedlot also should not have any transactions associated with it (except for the initial transaction).</p>
 488 <p>To delete seedlots in bulk, generate a list of type seedlot, for example, using the wizard. Open the section “Delete seedlots using a list” on the Manage Seedlots page and select the list. Seedlot deletion using a list is only available to user with curator status.</p>
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