mason/breeders_toolbox/upload_pedigrees_dialogs.mas

   1 <%args>
   2 </%args>
   3
   4 <div class="modal fade" id="upload_pedigrees_validate_display" name="upload_pedigrees_validate_display" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesValidateDialog">
   5   <div class="modal-dialog" role="document">
   6     <div class="modal-content">
   7       <div class="modal-header">
   8         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
   9         <h4 class="modal-title" id="uploadPedigreesValidateDialog">Results From Validation</h4>
  10       </div>
  11       <div class="modal-body">
  12         <div class="container-fluid">
  13             <div class="well">To Overwrite Parents In the Case That An Accession Already Has Male or Female Parents <input type="checkbox" checked id="pedigree_upload_overwrite_pedigrees" /></div>
  14           <table class="table table-hover">
  15             <tbody></tbody>
  16           </table>
  17         </div>
  18       </div>
  19       <div class="modal-footer">
  20         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
  21         <button type="button" class="btn btn-primary" name="upload_pedigrees_store" id="upload_pedigrees_store" data-dismiss="modal">Store</button>
  22       </div>
  23     </div>
  24   </div>
  25 </div>
  26
  27
  28 <div class="modal fade" id="pedigrees_upload_success_dialog_message" name="pedigrees_upload_success_dialog_message" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesSuccessDialog">
  29   <div class="modal-dialog" role="document">
  30     <div class="modal-content">
  31       <div class="modal-header">
  32         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  33         <h4 class="modal-title" id="uploadPedigreesSuccessDialog">Upload Successful</h4>
  34       </div>
  35       <div class="modal-body">
  36         <div class="container-fluid">
  37           <h2>The Pedigree Upload Finished With No Errors.</h2>
  38         </div>
  39       </div>
  40       <div class="modal-footer">
  41         <button type="button" id="pedigrees_upload_success_dismiss" class="btn btn-default" data-dismiss="modal">Close</button>
  42       </div>
  43     </div>
  44   </div>
  45 </div>
  46
  47
  48 <div class="modal fade" id="upload_pedigrees_dialog" name="upload_pedigrees_dialog" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesDialog">
  49   <div class="modal-dialog" role="document">
  50     <div class="modal-content">
  51       <div class="modal-header">
  52         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  53         <h4 class="modal-title" id="uploadPedigreesDialog">Upload Pedigrees</h4>
  54       </div>
  55       <div class="modal-body">
  56         <div class="container-fluid">
  57           <&| /page/explanation.mas, title=>'Template Information' &>
  58           <p>
  59           <b>File format information</b>
  60           <br>
  61           <a id="pedigrees_upload_spreadsheet_format_info">Spreadsheet Format</a>
  62           </p>
  63           </&>
  64
  65           <form method="post" enctype="multipart/form-data" encoding="multipart/form-data" id="upload_pedigrees_form" name="upload_pedigrees_form">
  66             <label for="pedigrees_uploaded_file" style="display: inline-block; width: 100px;">Upload Pedigree File:</label>
  67             <input type="file" name="pedigrees_uploaded_file" id="pedigrees_uploaded_file" encoding="multipart/form-data" />
  68           </form>
  69         </div>
  70       </div>
  71       <div class="modal-footer">
  72         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
  73         <button type="button" class="btn btn-primary" name="upload_pedigrees_dialog_submit" id="upload_pedigrees_dialog_submit">Validate</button>
  74       </div>
  75     </div>
  76   </div>
  77 </div>
  78
  79 <div class="modal fade" id="pedigrees_upload_spreadsheet_info_dialog" name="pedigrees_upload_spreadsheet_info_dialog" tabindex="-1" role="dialog" aria-labelledby="pedigreeUploadInfoDialog">
  80   <div class="modal-dialog" role="document">
  81     <div class="modal-content">
  82       <div class="modal-header">
  83         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  84         <h4 class="modal-title" id="pedigreeUploadInfoDialog">Template Information</h4>
  85       </div>
  86       <div class="modal-body">
  87         <div class="container-fluid">
  88           <b>Pedigrees may be uploaded in tab-delimited text file format</b>
  89           <br>
  90           <p>(.xls or .xlsx formats are <b>NOT</b> supported)</p>
  91           <hr>
  92           <b>Header:</b>
  93           <br>
  94           <p>The first row (header) should contain the following:</p>
  95
  96           <table class="table table-hover table-bordered">
  97           <body>
  98             <tr>
  99               <td>progeny name</td>
 100               <td>female parent accession</td>
 101               <!--<td>male parent accession(s) (if more than one, separate using commas)</td>-->
 102               <td>male parent accession</td>
 103               <td>type</td>
 104
 105             </tr>
 106           </body>
 107           </table>
 108
 109           <h4>Required fields:</h4>
 110           <ul>
 111         <li>progeny name (must exist in the database and can be accession uniquename or accession synonym)</li>
 112         <li>female parent accession (must exist in the database)</li>
 113         <li>type (biparental, self, open, sib)</li>
 114             <ul class="a">
 115                 <li>cross type descriptions:</li>
 116                 <ul class="b">
 117                     <li>biparental: An individual plant pollinated by another individual plant.</li>
 118                     <li>self: A self pollinated individual plant.</li>
 119                     <li>open: An individual plant pollinated by a group of plants or open pollinated (pollen may be from a group with known or unknown members).</li>
 120                     <li>sib: Mating between individuals that have at least one parent in common. Generally between two individuals within the same plot.</li>
 121                     <li>polycross: Mating between individual female parent from a population and the corresponding male population.</li>
 122                 </ul>
 123             </ul>
 124           </ul>
 125
 126           <h4>Optional fields</h4>
 127           <ul>
 128             <!--li>male parent accession (if provided, must exist in the database). Several potential male parents can be given separated by commas. A population entry will be generated in that case, with the listed male parents associated to the population.</li-->
 129         <li>male parent accession (can be accession uniquename or accession synonym or population name).</li>
 130           </ul>
 131
 132           <h4>Notes</h4>
 133           <ul>
 134             <li>Always specify the type of the cross (biparental, self, open, sib or polycross).</li>
 135             <li>If the type is open and no potential male parent is known, leave the male parent field empty
 136           </ul>
 137         </div>
 138       </div>
 139       <div class="modal-footer">
 140         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
 141       </div>
 142     </div>
 143   </div>
 144 </div>