repo.or.cz
/
GalaxyCodeBases.git
/
tree
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
history
|
HEAD
|
snapshot (
tar.gz
zip
)
modified: makesrc3.mk
master
[GalaxyCodeBases.git]
/
c_cpp
/
lib
/
htslib
/
test
/
tree
436c031dc1ad80a2d4252e477b1310b78ab13988
drwxr-xr-x
..
-rw-r--r--
751
auxf#values.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
5152
auxf#values_java.cram
blob
|
blame
|
history
|
raw
-rw-r--r--
29
auxf.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
18
auxf.fa.fai
blob
|
blame
|
history
|
raw
-rw-r--r--
15
bgziptest.txt
blob
|
blame
|
history
|
raw
-rw-r--r--
181
bgziptest.txt.gz
blob
|
blame
|
history
|
raw
-rw-r--r--
88
bgziptest.txt.gz.gzi
blob
|
blame
|
history
|
raw
-rw-r--r--
148
c1#bounds.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
337
c1#clip.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
433
c1#noseq.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
388
c1#pad1.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
527
c1#pad2.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
665
c1#pad3.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
429
c1#unknown.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
15
c1.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
14
c1.fa.fai
blob
|
blame
|
history
|
raw
-rw-r--r--
847
c2#pad.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
14
c2.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
12
c2.fa.fai
blob
|
blame
|
history
|
raw
-rw-r--r--
341
ce#1.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
645
ce#2.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1872
ce#5.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1836
ce#5b.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
6784
ce#5b_java.cram
blob
|
blame
|
history
|
raw
-rw-r--r--
2147244
ce#large_seq.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
547
ce#supp.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1638
ce#tag_depadded.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1650
ce#tag_padded.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1325
ce#unmap.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
2747
ce#unmap1.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
5525
ce#unmap2.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1060702
ce.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
230
ce.fa.fai
blob
|
blame
|
history
|
raw
-rwxr-xr-x
5641
compare_sam.pl
blob
|
blame
|
history
|
raw
-rwxr-xr-x
3198
cross_validate.sh
blob
|
blame
|
history
|
raw
-rw-r--r--
231
faidx.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
2430
fieldarith.c
blob
|
blame
|
history
|
raw
-rw-r--r--
916
fieldarith.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
240
formatcols.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
226
formatmissing-out.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
226
formatmissing.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
8709
hfile.c
blob
|
blame
|
history
|
raw
-rw-r--r--
17590
hts_endian.c
blob
|
blame
|
history
|
raw
-rw-r--r--
1017
md#1.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
45
md.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
13
md.fa.fai
blob
|
blame
|
history
|
raw
-rw-r--r--
325
noroundtrip-out.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
271
noroundtrip.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
14328
sam.c
blob
|
blame
|
history
|
raw
drwxr-xr-x
-
tabix
tree
|
history
-rw-r--r--
4904
test-bcf-sr.c
blob
|
blame
|
history
|
raw
-rwxr-xr-x
16022
test-bcf-sr.pl
blob
|
blame
|
history
|
raw
-rwxr-xr-x
2602
test-logging.pl
blob
|
blame
|
history
|
raw
-rw-r--r--
4307
test-regidx.c
blob
|
blame
|
history
|
raw
-rw-r--r--
13224
test-vcf-api.c
blob
|
blame
|
history
|
raw
-rw-r--r--
1936
test-vcf-api.out
blob
|
blame
|
history
|
raw
-rw-r--r--
2024
test-vcf-hdr-in.vcf
blob
|
blame
|
history
|
raw
-rw-r--r--
1349
test-vcf-hdr.out
blob
|
blame
|
history
|
raw
-rw-r--r--
3823
test-vcf-sweep.c
blob
|
blame
|
history
|
raw
-rw-r--r--
92
test-vcf-sweep.out
blob
|
blame
|
history
|
raw
-rwxr-xr-x
11348
test.pl
blob
|
blame
|
history
|
raw
-rw-r--r--
24351
test_bgzf.c
blob
|
blame
|
history
|
raw
-rw-r--r--
6961
test_view.c
blob
|
blame
|
history
|
raw
-rw-r--r--
1684
thrash_threads1.c
blob
|
blame
|
history
|
raw
-rw-r--r--
1614
thrash_threads2.c
blob
|
blame
|
history
|
raw
-rw-r--r--
1725
thrash_threads3.c
blob
|
blame
|
history
|
raw
-rw-r--r--
2266
thrash_threads4.c
blob
|
blame
|
history
|
raw
-rw-r--r--
2169
thrash_threads5.c
blob
|
blame
|
history
|
raw
-rw-r--r--
3405
thrash_threads6.c
blob
|
blame
|
history
|
raw
-rw-r--r--
2938
thread_pool.md
blob
|
blame
|
history
|
raw
-rw-r--r--
0
xx#blank.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
905485
xx#large_aux.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
651
xx#large_aux2.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
22668
xx#large_aux_java.cram
blob
|
blame
|
history
|
raw
-rw-r--r--
254
xx#minimal.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
304
xx#pair.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
298
xx#repeated.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
517
xx#rg.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1028
xx#tlen.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
1096
xx#tlen2.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
267
xx#triplet.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
320
xx#unsorted.sam
blob
|
blame
|
history
|
raw
-rw-r--r--
51
xx.fa
blob
|
blame
|
history
|
raw
-rw-r--r--
29
xx.fa.fai
blob
|
blame
|
history
|
raw