| 2018-09-28 |
Carnë Draug | maint: update and clean removed modules and dependencies...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::DB::SeqVersion: move into its own distribution
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Tools::SiRNA and related moved to separate distribution
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Tools::Analysis::Protein: move modules into their...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Tools::Analysis::Protein::Scansite: move to separate...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Tools::Analysis::Protein:ELM: move to separate...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Tools::Analysis::DNA::ESEfinder: move to separate...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::DB::RefSeq, Bio::DB::EMBL, and subclasses of Bio...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | Bio::Taxonomy: move deprecated namespace to its own...
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | lib/BioPerl.pm: convert line-ending dos2unix
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commit | commitdiff | tree |
| 2018-09-28 |
Carnë Draug | doc: update HACKING instructions with dzil instructions
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | t/*: remove "use lib '.'" and t/lib/Error.pm
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | Bio::DB::CUTG: move into its own distribution
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | Bio::DB::Taxonomy::sqlite: move into its own distribution
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | Bio::DB::GFF move into its own namespace (except Bio...
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | Bio::DB::SeqFeature::* move namespace into its own...
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | maint: update changes from 1f7b54a281a8
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commit | commitdiff | tree |
| 2018-09-25 |
Carnë Draug | Bio::Variation::* move namespace into its own distribution.
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commit | commitdiff | tree |
| 2018-09-24 |
Carnë Draug | Remove Bio::SeqIO support for abi, alf, ctf, exp, pln...
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commit | commitdiff | tree |
| 2018-09-24 |
Carnë Draug | Bio::Cluster and Bio::ClusterIO moved to their own...
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commit | commitdiff | tree |
| 2018-09-22 |
Carnë Draug | Bio::Phenotype::* move what's left of the namespace...
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commit | commitdiff | tree |
| 2018-09-22 |
Carnë Draug | maint: remove no longer used test data files.
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commit | commitdiff | tree |
| 2018-09-22 |
Carnë Draug | Bio::LiveSeq::* move whole namespace to its own distribution.
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | maint: update gitignore rules
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | maint: restructure to use Dist::Zilla
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | t/AlignIO/AlignIO.t: fix number of tests in plan (fixup...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | t/Annotation/Annotation.t: remove test for Bio::SeqFeature...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | Bio/Tools/Run/Phylo/PhyloBase.pm: bring base class...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | Bio/Tools/Phylo/Gumby.pm: move to its own distribution
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | DB/SeqFeature/Store/berkeleydb3.pm: fix errors so it...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | Adjust tests indirectly making use of Bio::AlignIO...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | bp_process_wormbase: move program to new Bio-DB-Ace...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | bp_netinstall: remove out of date program
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | Move modules dependent on Bio::Ext::Align into defunct...
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commit | commitdiff | tree |
| 2018-09-17 |
Carnë Draug | Bio::DB::Expression: move to defunct bioperl-microarray
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | maint: 644 permissions for almost all files
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | maint: set all source code with utf-8 encoding
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | maint: remove maintainer out of date files
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | ide: remove module templates - no longer needed after...
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | ide/bioperl-mode: into its own repository to be developed...
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commit | commitdiff | tree |
| 2018-09-16 |
Carnë Draug | maint: remove bioperl-mode release tarballs from version...
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commit | commitdiff | tree |
| 2018-09-15 |
Carnë Draug | Bio::Index::Abstract->_type_and_version: check type...
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commit | commitdiff | tree |
| 2018-09-15 |
Carnë Draug | t/LocalDB/Index/BlastTable.t: use tempdir to avoid...
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commit | commitdiff | tree |
| 2018-09-15 |
Carnë Draug | t/LocalDB/Index/Blast.t: create test tempfiles within...
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commit | commitdiff | tree |
| 2018-09-15 |
Carnë Draug | maint: remove unused test data files
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commit | commitdiff | tree |
| 2018-09-14 |
Carnë Draug | Remove AlignIO and Index stockholm modules to new Bio...
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commit | commitdiff | tree |
| 2018-09-14 |
Carnë Draug | Bio::DB::Universal: move into its own distribution
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commit | commitdiff | tree |
| 2018-09-14 |
Carnë Draug | maint: simplify README to cover simple install instructions.
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Bring base classes from BioPerl-run back to BioPerl.
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Remove use of Bio::Perl which has been moved to Bio...
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Bio::DB::MeSH move to its own distribution.
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Move HMMER related modules, tests, and programs to...
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Bio::DB::TFBS namespace has been moved to its own distributi...
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commit | commitdiff | tree |
| 2018-09-13 |
Carnë Draug | Bio::DB::HIV and related modules and scripts moved...
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commit | commitdiff | tree |
| 2018-09-12 |
Carnë Draug | Bio::Align::Graphics: move into its own distribution...
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commit | commitdiff | tree |
| 2018-09-12 |
Carnë Draug | Bio::Tools::Run::RemoteBlast: move into a new distribution...
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commit | commitdiff | tree |
| 2018-09-12 |
Carnë Draug | Bio::Perl: move its own distribution named Bio-Procedural
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commit | commitdiff | tree |
| 2018-09-12 |
Carnë Draug | Bio::MolEvol::CodonModel: move into it separate repo...
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commit | commitdiff | tree |
| 2018-09-12 |
Carnë Draug | Bio::SeqIO::entrezgene: move to existing Bio-ASN1-entrezgene...
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/Restriction/*: move to another repo with same name.
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/Tools/Gel.pm: move to another repo with same name.
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/SeqEvolution/*: move to another repo with same...
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/Structure/*: move to another repo with same name.
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | t/data: remove more test data files which moved to...
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/Assembly*: move to another repo with same name.
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/PhyloNetwork*: move to another repo with same name.
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/SeqIO/excel.pm: move to another repo with same...
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commit | commitdiff | tree |
| 2018-09-11 |
Carnë Draug | Bio/TreeIO/svggraph.pm: move to another repo with same...
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Bio/Tree/Draw/Cladogram.pm: move to another repo with...
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Bio/Draw/Pictogram.pm: move to another repo with same...
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Move all modules interfacing to ACeDB servers to a...
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Move all NeXML related modules and tests to a new Bio...
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Remove some unused test data files.
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commit | commitdiff | tree |
| 2018-09-10 |
Carnë Draug | Remove entire Bio::PopGen namespace and related modules...
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commit | commitdiff | tree |
| 2018-09-08 |
Carnë Draug | scripts/tree/bp_blast2tree.pl: moved to bioperl-run
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commit | commitdiff | tree |
| 2018-09-07 |
Carnë Draug | deobfuscator: remove this whole project
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commit | commitdiff | tree |
| 2018-09-04 |
Carnë Draug | Consistent shebang line to '+#!/usr/bin/perl'
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commit | commitdiff | tree |
| 2018-08-23 |
Carnë Draug | deobfuscator scripts: use warnings pragma instead of...
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commit | commitdiff | tree |
| 2018-07-25 |
Carnë Draug | Bio::MolEvol::CodonModel: fix documentation (issue...
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commit | commitdiff | tree |
| 2017-09-13 |
Carnë Draug | examples/align/clustalw.pl: remove file, now part of...
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commit | commitdiff | tree |
| 2017-09-08 |
Carnë Draug | Removal of Bio::Tools::Phylo::PAML.pm and related modules...
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commit | commitdiff | tree |
| 2017-08-31 |
Carnë Draug | Bio::PhyloNetwork::muVector: revert non-typo from 54c99cf411
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commit | commitdiff | tree |
| 2017-08-30 |
Carnë Draug | maint: fix multiple typos identified by lintian
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commit | commitdiff | tree |
| 2015-11-29 |
Carnë Draug | bp_pairwise_kaks.pl: do not mix space and tabs for...
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commit | commitdiff | tree |
| 2013-11-26 |
Carnë Draug | Bio::Align::Utilities - remove usage of /r option to...
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commit | commitdiff | tree |
| 2013-11-26 |
Carnë Draug | Fix nonsense in code comments.
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commit | commitdiff | tree |
| 2013-11-26 |
Carnë Draug | Bio::Align::Utilities - follow some perl best practices.
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commit | commitdiff | tree |
| 2013-11-26 |
Carnë Draug | Bio::Align::Utilities - new function most_common_sequences
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commit | commitdiff | tree |
| 2013-11-26 |
Carnë Draug | Bio::SimpleAlign - follow some perl best practices
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commit | commitdiff | tree |
| 2013-04-04 |
Carnë Draug | maint: remove files that have been moved to a separate...
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commit | commitdiff | tree |
| 2013-04-02 |
Carnë Draug | maint: update Changes after removing files from Bio...
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commit | commitdiff | tree |
| 2013-04-02 |
Carnë Draug | maint: remove files that have been moved to a separate...
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commit | commitdiff | tree |
| 2013-04-02 |
Carnë Draug | tests: move tests from Root to Assembly and SeqIO ...
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commit | commitdiff | tree |
| 2013-03-28 |
Carnë Draug | maint: remove hard tabs and trailing whitespace
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commit | commitdiff | tree |
| 2013-03-28 |
Carnë Draug | tests for inheritance should belong on the child class...
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commit | commitdiff | tree |
| 2013-03-28 |
Carnë Draug | remove hard tabs and trailing whitespace from some...
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commit | commitdiff | tree |
| 2013-03-28 |
Carnë Draug | Annotation: fix typo on test
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commit | commitdiff | tree |
| 2013-03-26 |
Carnë Draug | Bio::Cluster::SequenceFamily - bug fixes and performance
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commit | commitdiff | tree |
| 2013-03-26 |
Carnë Draug | doc: fix indentation, remove hard tabs and trailing...
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commit | commitdiff | tree |
| 2013-03-21 |
Carnë Draug | recover GenericWebAgent from Bio-EUtilities
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commit | commitdiff | tree |
