Public Git Hosting - bioperl-live.git/commit

commit	543e0060151a0e12d3e7f49b476c4fff897df034
author	Carnë Draug <carandraug+dev@gmail.com>
	Tue, 25 Sep 2018 18:24:19 +0000 (25 19:24 +0100)
committer	Carnë Draug <carandraug+dev@gmail.com>
	Tue, 25 Sep 2018 18:42:25 +0000 (25 19:42 +0100)
tree	e0efe8c5c2a09b9d9336e1c2f96c1a87d5919f36	tree \| snapshot (tar.gz zip)
parent	48901487fad20c294dea9cf0aa92cc6a3d161f29	commit \| diff

t/*: remove "use lib '.'" and t/lib/Error.pm

I'm guessing this was here for a reason a long time ago but seems
like it's no longer necessary.

242 files changed:

t/Align/AlignStats.t		diff \| blob \| blame \| history
t/Align/AlignUtil.t		diff \| blob \| blame \| history
t/Align/SimpleAlign.t		diff \| blob \| blame \| history
t/Align/TreeBuild.t		diff \| blob \| blame \| history
t/Align/Utilities.t		diff \| blob \| blame \| history
t/AlignIO/AlignIO.t		diff \| blob \| blame \| history
t/AlignIO/arp.t		diff \| blob \| blame \| history
t/AlignIO/bl2seq.t		diff \| blob \| blame \| history
t/AlignIO/clustalw.t		diff \| blob \| blame \| history
t/AlignIO/emboss.t		diff \| blob \| blame \| history
t/AlignIO/fasta.t		diff \| blob \| blame \| history
t/AlignIO/largemultifasta.t		diff \| blob \| blame \| history
t/AlignIO/maf.t		diff \| blob \| blame \| history
t/AlignIO/mase.t		diff \| blob \| blame \| history
t/AlignIO/mega.t		diff \| blob \| blame \| history
t/AlignIO/meme.t		diff \| blob \| blame \| history
t/AlignIO/metafasta.t		diff \| blob \| blame \| history
t/AlignIO/msf.t		diff \| blob \| blame \| history
t/AlignIO/nexus.t		diff \| blob \| blame \| history
t/AlignIO/pfam.t		diff \| blob \| blame \| history
t/AlignIO/phylip.t		diff \| blob \| blame \| history
t/AlignIO/po.t		diff \| blob \| blame \| history
t/AlignIO/prodom.t		diff \| blob \| blame \| history
t/AlignIO/psi.t		diff \| blob \| blame \| history
t/AlignIO/selex.t		diff \| blob \| blame \| history
t/AlignIO/xmfa.t		diff \| blob \| blame \| history
t/Alphabet.t		diff \| blob \| blame \| history
t/Annotation/Annotation.t		diff \| blob \| blame \| history
t/Annotation/AnnotationAdaptor.t		diff \| blob \| blame \| history
t/LocalDB/Fasta.t		diff \| blob \| blame \| history
t/LocalDB/Flat.t		diff \| blob \| blame \| history
t/LocalDB/Index/Blast.t		diff \| blob \| blame \| history
t/LocalDB/Index/BlastTable.t		diff \| blob \| blame \| history
t/LocalDB/Index/Index.t		diff \| blob \| blame \| history
t/LocalDB/Qual.t		diff \| blob \| blame \| history
t/LocalDB/Registry.t		diff \| blob \| blame \| history
t/LocalDB/Taxonomy/greengenes.t		diff \| blob \| blame \| history
t/LocalDB/Taxonomy/silva.t		diff \| blob \| blame \| history
t/Map/Cyto.t		diff \| blob \| blame \| history
t/Map/Linkage.t		diff \| blob \| blame \| history
t/Map/Map.t		diff \| blob \| blame \| history
t/Map/MapIO.t		diff \| blob \| blame \| history
t/Map/MicrosatelliteMarker.t		diff \| blob \| blame \| history
t/Map/Physical.t		diff \| blob \| blame \| history
t/Matrix/IO/masta.t		diff \| blob \| blame \| history
t/Matrix/IO/psm.t		diff \| blob \| blame \| history
t/Matrix/InstanceSite.t		diff \| blob \| blame \| history
t/Matrix/Matrix.t		diff \| blob \| blame \| history
t/Matrix/ProtMatrix.t		diff \| blob \| blame \| history
t/Matrix/ProtPsm.t		diff \| blob \| blame \| history
t/Matrix/SiteMatrix.t		diff \| blob \| blame \| history
t/Ontology/GOterm.t		diff \| blob \| blame \| history
t/Ontology/GraphAdaptor.t		diff \| blob \| blame \| history
t/Ontology/IO/go.t		diff \| blob \| blame \| history
t/Ontology/IO/interpro.t		diff \| blob \| blame \| history
t/Ontology/IO/obo.t		diff \| blob \| blame \| history
t/Ontology/Ontology.t		diff \| blob \| blame \| history
t/Ontology/OntologyEngine.t		diff \| blob \| blame \| history
t/Ontology/OntologyStore.t		diff \| blob \| blame \| history
t/Ontology/Relationship.t		diff \| blob \| blame \| history
t/Ontology/RelationshipType.t		diff \| blob \| blame \| history
t/Ontology/Term.t		diff \| blob \| blame \| history
t/RemoteDB/BioFetch.t		diff \| blob \| blame \| history
t/RemoteDB/EMBL.t		diff \| blob \| blame \| history
t/RemoteDB/EntrezGene.t		diff \| blob \| blame \| history
t/RemoteDB/GenBank.t		diff \| blob \| blame \| history
t/RemoteDB/GenPept.t		diff \| blob \| blame \| history
t/RemoteDB/Query/GenBank.t		diff \| blob \| blame \| history
t/RemoteDB/RefSeq.t		diff \| blob \| blame \| history
t/RemoteDB/SeqRead_fail.t		diff \| blob \| blame \| history
t/RemoteDB/SeqVersion.t		diff \| blob \| blame \| history
t/RemoteDB/SwissProt.t		diff \| blob \| blame \| history
t/RemoteDB/Taxonomy.t		diff \| blob \| blame \| history
t/Root/HTTPget.t		diff \| blob \| blame \| history
t/Root/IO.t		diff \| blob \| blame \| history
t/Root/RootI.t		diff \| blob \| blame \| history
t/Root/RootIO.t		diff \| blob \| blame \| history
t/Root/Storable.t		diff \| blob \| blame \| history
t/Root/Utilities.t		diff \| blob \| blame \| history
t/SearchIO/CigarString.t		diff \| blob \| blame \| history
t/SearchIO/SearchIO.t		diff \| blob \| blame \| history
t/SearchIO/SimilarityPair.t		diff \| blob \| blame \| history
t/SearchIO/Tiling.t		diff \| blob \| blame \| history
t/SearchIO/Writer/GbrowseGFF.t		diff \| blob \| blame \| history
t/SearchIO/Writer/HSPTableWriter.t		diff \| blob \| blame \| history
t/SearchIO/Writer/HTMLWriter.t		diff \| blob \| blame \| history
t/SearchIO/Writer/HitTableWriter.t		diff \| blob \| blame \| history
t/SearchIO/Writer/TextWriter.t		diff \| blob \| blame \| history
t/SearchIO/axt.t		diff \| blob \| blame \| history
t/SearchIO/blast.t		diff \| blob \| blame \| history
t/SearchIO/blast_pull.t		diff \| blob \| blame \| history
t/SearchIO/blasttable.t		diff \| blob \| blame \| history
t/SearchIO/cross_match.t		diff \| blob \| blame \| history
t/SearchIO/erpin.t		diff \| blob \| blame \| history
t/SearchIO/exonerate.t		diff \| blob \| blame \| history
t/SearchIO/fasta.t		diff \| blob \| blame \| history
t/SearchIO/gmap_f9.t		diff \| blob \| blame \| history
t/SearchIO/infernal.t		diff \| blob \| blame \| history
t/SearchIO/megablast.t		diff \| blob \| blame \| history
t/SearchIO/psl.t		diff \| blob \| blame \| history
t/SearchIO/rnamotif.t		diff \| blob \| blame \| history
t/SearchIO/sim4.t		diff \| blob \| blame \| history
t/SearchIO/waba.t		diff \| blob \| blame \| history
t/SearchIO/wise.t		diff \| blob \| blame \| history
t/Seq/DBLink.t		diff \| blob \| blame \| history
t/Seq/EncodedSeq.t		diff \| blob \| blame \| history
t/Seq/LargeLocatableSeq.t		diff \| blob \| blame \| history
t/Seq/LargePSeq.t		diff \| blob \| blame \| history
t/Seq/LocatableSeq.t		diff \| blob \| blame \| history
t/Seq/MetaSeq.t		diff \| blob \| blame \| history
t/Seq/PrimaryQual.t		diff \| blob \| blame \| history
t/Seq/PrimarySeq.t		diff \| blob \| blame \| history
t/Seq/PrimedSeq.t		diff \| blob \| blame \| history
t/Seq/Quality.t		diff \| blob \| blame \| history
t/Seq/Seq.t		diff \| blob \| blame \| history
t/Seq/SimulatedRead.t		diff \| blob \| blame \| history
t/Seq/WithQuality.t		diff \| blob \| blame \| history
t/SeqFeature/Amplicon.t		diff \| blob \| blame \| history
t/SeqFeature/Clone.t		diff \| blob \| blame \| history
t/SeqFeature/Collection.t		diff \| blob \| blame \| history
t/SeqFeature/Computation.t		diff \| blob \| blame \| history
t/SeqFeature/FeaturePair.t		diff \| blob \| blame \| history
t/SeqFeature/Gene.t		diff \| blob \| blame \| history
t/SeqFeature/Generic.t		diff \| blob \| blame \| history
t/SeqFeature/Location.t		diff \| blob \| blame \| history
t/SeqFeature/LocationFactory.t		diff \| blob \| blame \| history
t/SeqFeature/Primer.t		diff \| blob \| blame \| history
t/SeqFeature/Range.t		diff \| blob \| blame \| history
t/SeqFeature/RangeI.t		diff \| blob \| blame \| history
t/SeqFeature/SeqAnalysisParser.t		diff \| blob \| blame \| history
t/SeqFeature/SubSeq.t		diff \| blob \| blame \| history
t/SeqFeature/Unflattener.t		diff \| blob \| blame \| history
t/SeqIO/Handler.t		diff \| blob \| blame \| history
t/SeqIO/MultiFile.t		diff \| blob \| blame \| history
t/SeqIO/Multiple_fasta.t		diff \| blob \| blame \| history
t/SeqIO/SeqBuilder.t		diff \| blob \| blame \| history
t/SeqIO/SeqIO.t		diff \| blob \| blame \| history
t/SeqIO/Splicedseq.t		diff \| blob \| blame \| history
t/SeqIO/ace.t		diff \| blob \| blame \| history
t/SeqIO/agave.t		diff \| blob \| blame \| history
t/SeqIO/asciitree.t		diff \| blob \| blame \| history
t/SeqIO/bsml.t		diff \| blob \| blame \| history
t/SeqIO/bsml_sax.t		diff \| blob \| blame \| history
t/SeqIO/chadoxml.t		diff \| blob \| blame \| history
t/SeqIO/chaos.t		diff \| blob \| blame \| history
t/SeqIO/chaosxml.t		diff \| blob \| blame \| history
t/SeqIO/embl.t		diff \| blob \| blame \| history
t/SeqIO/fasta.t		diff \| blob \| blame \| history
t/SeqIO/fastq.t		diff \| blob \| blame \| history
t/SeqIO/flybase_chadoxml.t		diff \| blob \| blame \| history
t/SeqIO/game.t		diff \| blob \| blame \| history
t/SeqIO/gbxml.t		diff \| blob \| blame \| history
t/SeqIO/gcg.t		diff \| blob \| blame \| history
t/SeqIO/genbank.t		diff \| blob \| blame \| history
t/SeqIO/interpro.t		diff \| blob \| blame \| history
t/SeqIO/kegg.t		diff \| blob \| blame \| history
t/SeqIO/largefasta.t		diff \| blob \| blame \| history
t/SeqIO/lasergene.t		diff \| blob \| blame \| history
t/SeqIO/locuslink.t		diff \| blob \| blame \| history
t/SeqIO/mbsout.t		diff \| blob \| blame \| history
t/SeqIO/metafasta.t		diff \| blob \| blame \| history
t/SeqIO/msout.t		diff \| blob \| blame \| history
t/SeqIO/phd.t		diff \| blob \| blame \| history
t/SeqIO/pir.t		diff \| blob \| blame \| history
t/SeqIO/qual.t		diff \| blob \| blame \| history
t/SeqIO/raw.t		diff \| blob \| blame \| history
t/SeqIO/scf.t		diff \| blob \| blame \| history
t/SeqIO/strider.t		diff \| blob \| blame \| history
t/SeqIO/swiss.t		diff \| blob \| blame \| history
t/SeqIO/tab.t		diff \| blob \| blame \| history
t/SeqIO/table.t		diff \| blob \| blame \| history
t/SeqIO/tigr.t		diff \| blob \| blame \| history
t/SeqIO/tigrxml.t		diff \| blob \| blame \| history
t/SeqIO/tinyseq.t		diff \| blob \| blame \| history
t/SeqTools/CodonTable.t		diff \| blob \| blame \| history
t/SeqTools/ECnumber.t		diff \| blob \| blame \| history
t/SeqTools/GuessSeqFormat.t		diff \| blob \| blame \| history
t/SeqTools/OddCodes.t		diff \| blob \| blame \| history
t/SeqTools/SeqPattern.t		diff \| blob \| blame \| history
t/SeqTools/SeqStats.t		diff \| blob \| blame \| history
t/SeqTools/SeqUtils.t		diff \| blob \| blame \| history
t/SeqTools/SeqWords.t		diff \| blob \| blame \| history
t/Species.t		diff \| blob \| blame \| history
t/Symbol.t		diff \| blob \| blame \| history
t/TaxonTree.t		diff \| blob \| blame \| history
t/Tools/Alignment/Consed.t		diff \| blob \| blame \| history
t/Tools/AmpliconSearch.t		diff \| blob \| blame \| history
t/Tools/Analysis/DNA/ESEfinder.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/Domcut.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/ELM.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/GOR4.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/HNN.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/NetPhos.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/Scansite.t		diff \| blob \| blame \| history
t/Tools/Analysis/Protein/Sopma.t		diff \| blob \| blame \| history
t/Tools/EMBOSS/Palindrome.t		diff \| blob \| blame \| history
t/Tools/Est2Genome.t		diff \| blob \| blame \| history
t/Tools/FootPrinter.t		diff \| blob \| blame \| history
t/Tools/GFF.t		diff \| blob \| blame \| history
t/Tools/Geneid.t		diff \| blob \| blame \| history
t/Tools/Genewise.t		diff \| blob \| blame \| history
t/Tools/Genomewise.t		diff \| blob \| blame \| history
t/Tools/Genpred.t		diff \| blob \| blame \| history
t/Tools/IUPAC.t		diff \| blob \| blame \| history
t/Tools/Lucy.t		diff \| blob \| blame \| history
t/Tools/Match.t		diff \| blob \| blame \| history
t/Tools/Phylo/Gerp.t		diff \| blob \| blame \| history
t/Tools/Phylo/Molphy.t		diff \| blob \| blame \| history
t/Tools/Phylo/Phylip/ProtDist.t		diff \| blob \| blame \| history
t/Tools/Primer3.t		diff \| blob \| blame \| history
t/Tools/Promoterwise.t		diff \| blob \| blame \| history
t/Tools/PrositeScan.t		diff \| blob \| blame \| history
t/Tools/Pseudowise.t		diff \| blob \| blame \| history
t/Tools/QRNA.t		diff \| blob \| blame \| history
t/Tools/RandDistFunctions.t		diff \| blob \| blame \| history
t/Tools/RepeatMasker.t		diff \| blob \| blame \| history
t/Tools/Seg.t		diff \| blob \| blame \| history
t/Tools/SiRNA.t		diff \| blob \| blame \| history
t/Tools/Sigcleave.t		diff \| blob \| blame \| history
t/Tools/Signalp.t		diff \| blob \| blame \| history
t/Tools/Signalp/ExtendedSignalp.t		diff \| blob \| blame \| history
t/Tools/Sim4.t		diff \| blob \| blame \| history
t/Tools/Spidey/Spidey.t		diff \| blob \| blame \| history
t/Tools/TandemRepeatsFinder.t		diff \| blob \| blame \| history
t/Tools/TargetP.t		diff \| blob \| blame \| history
t/Tools/Tmhmm.t		diff \| blob \| blame \| history
t/Tools/ePCR.t		diff \| blob \| blame \| history
t/Tools/pICalculator.t		diff \| blob \| blame \| history
t/Tools/tRNAscanSE.t		diff \| blob \| blame \| history
t/Tree/Compatible.t		diff \| blob \| blame \| history
t/Tree/Node.t		diff \| blob \| blame \| history
t/Tree/RandomTreeFactory.t		diff \| blob \| blame \| history
t/Tree/Tree.t		diff \| blob \| blame \| history
t/Tree/TreeIO.t		diff \| blob \| blame \| history
t/Tree/TreeIO/lintree.t		diff \| blob \| blame \| history
t/Tree/TreeIO/newick.t		diff \| blob \| blame \| history
t/Tree/TreeIO/nexus.t		diff \| blob \| blame \| history
t/Tree/TreeIO/nhx.t		diff \| blob \| blame \| history
t/Tree/TreeIO/phyloxml.t		diff \| blob \| blame \| history
t/Tree/TreeIO/tabtree.t		diff \| blob \| blame \| history
t/Tree/TreeStatistics.t		diff \| blob \| blame \| history
t/lib/Error.pm	[deleted file]	blob \| blame \| history

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