Move HMMER related modules, tests, and programs to new distribution.
commit6be5d5f5c01fbb11c9249fbb633ecc358ae3e0cb
authorCarnë Draug <carandraug+dev@gmail.com>
Thu, 13 Sep 2018 15:11:05 +0000 (13 16:11 +0100)
committerCarnë Draug <carandraug+dev@gmail.com>
Thu, 13 Sep 2018 15:11:05 +0000 (13 16:11 +0100)
treecebf1e606a62a9f1d0bd7d331c029b001d95adc9
parentb533f0eb93adb23ed16da217f5d6a3e8093725fa
Move HMMER related modules, tests, and programs to new distribution.
40 files changed:
Bio/Index/Hmmer.pm [deleted file]
Bio/Search/HSP/HMMERHSP.pm [deleted file]
Bio/Search/HSP/HmmpfamHSP.pm [deleted file]
Bio/Search/Hit/HMMERHit.pm [deleted file]
Bio/Search/Hit/HmmpfamHit.pm [deleted file]
Bio/Search/Hit/hmmer3Hit.pm [deleted file]
Bio/Search/Result/HMMERResult.pm [deleted file]
Bio/Search/Result/HmmpfamResult.pm [deleted file]
Bio/Search/Result/hmmer3Result.pm [deleted file]
Bio/SearchIO/hmmer.pm [deleted file]
Bio/SearchIO/hmmer2.pm [deleted file]
Bio/SearchIO/hmmer3.pm [deleted file]
Bio/SearchIO/hmmer_pull.pm [deleted file]
Bio/Tools/HMMER/Domain.pm [deleted file]
Bio/Tools/HMMER/Results.pm [deleted file]
Bio/Tools/HMMER/Set.pm [deleted file]
Bio/Tools/Hmmpfam.pm [deleted file]
Changes
scripts/searchio/bp_hmmer_to_table.pl [deleted file]
scripts/searchio/bp_parse_hmmsearch.pl [deleted file]
t/LocalDB/Index/Index.t
t/SearchIO/hmmer.t [deleted file]
t/SearchIO/hmmer_pull.t [deleted file]
t/Tools/Hmmer.t [deleted file]
t/data/L77119.hmmer [deleted file]
t/data/cysprot1b.hmmsearch [deleted file]
t/data/hmmpfam_HSPdashline.txt [deleted file]
t/data/hmmpfam_cs.out [deleted file]
t/data/hmmpfam_fake.out [deleted file]
t/data/hmmpfam_multiresult.out [deleted file]
t/data/hmmscan.out [deleted file]
t/data/hmmscan_multi_domain.out [deleted file]
t/data/hmmscan_qry_stop.txt [deleted file]
t/data/hmmscan_sec_struct.out [deleted file]
t/data/hmmsearch.out [deleted file]
t/data/hmmsearch3.out [deleted file]
t/data/hmmsearch3_multi.out [deleted file]
t/data/nhmmer-3.1.out [deleted file]
t/data/pfamOutput-bug3376.out [deleted file]
t/data/phmmer.out [deleted file]